Browse Element(s) Details


OsAffx.17044.1.S1_at

Description tigr:9636.m01750
TID=OsAffx.17044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T24D18.8 protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1739011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein
LOC_Os08g17370NANA8+10616113..10618959Transmembrane 9 superfamily protein member 2 precursor, putative, expressed
LOC_Os08g17380NANA8+10622724..10623566retrotransposon protein, putative, unclassified
LOC_Os08g17390OsAffx.17044.1.S1_at11/118+10623966..10628024expressed protein
LOC_Os08g17390Os.11404.1.S1_s_at11/118+10623966..10628024expressed protein
LOC_Os08g17400Os.27818.1.S1_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17400Os.27818.1.S2_at11/118+10627000..10633260WRKY DNA binding domain containing protein, expressed
LOC_Os08g17410Os.6810.1.S1_at10/118+10649176..10652201leucine-rich repeat transmembrane protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17044.1.S1_at--278--5471Chr08:10627653..10627677 (25 bp)
GAACTACCGCGGAAGTATCTTTCAA
LOC_Os08g17390
OsAffx.17044.1.S1_at--1045--6131Chr08:10627678..10627702 (25 bp)
GAGGGTATTCTTCATGTCATCGGGA
LOC_Os08g17390
OsAffx.17044.1.S1_at--38--8831Chr08:10627716..10627740 (25 bp)
TGATAAGGGTTTGCGCAGACTCCAC
LOC_Os08g17390
OsAffx.17044.1.S1_at--804--9671Chr08:10627748..10627772 (25 bp)
TCACCACCGATTTCTGAAGTCTTGC
LOC_Os08g17390
OsAffx.17044.1.S1_at--1051--5311Chr08:10627763..10627787 (25 bp)
GAAGTCTTGCCCTTCATGGGCTCAT
LOC_Os08g17390
OsAffx.17044.1.S1_at--779--9451Chr08:10627812..10627836 (25 bp)
TCGGCTGTTTCTGTTCTGATGTTGA
LOC_Os08g17390
OsAffx.17044.1.S1_at--542--1031Chr08:10627836..10627860 (25 bp)
AGGTCATTGTGCTGGGCTGCTCAGA
LOC_Os08g17390
OsAffx.17044.1.S1_at--392--6291Chr08:10627859..10627883 (25 bp)
GATGTTGTCTCTGCTGGAATGATCA
LOC_Os08g17390
OsAffx.17044.1.S1_at--1015--4291Chr08:10627899..10627923 (25 bp)
CCTTCGACTCACTGTTGTTTCTAAA
LOC_Os08g17390
OsAffx.17044.1.S1_at--626--6431Chr08:10627929..10627953 (25 bp)
GATCATGGTTGTGCTTACCTTCATA
LOC_Os08g17390
OsAffx.17044.1.S1_at--485--10231Chr08:10627965..10627989 (25 bp)
TATTGTTATCATCGTCTGGTGCCTT
LOC_Os08g17390
Target Sequence 
GAACTACCGCGGAAGTATCTTTCAAGAGGGTATTCTTCATGTCATCGGGATTAGTTTTAATGCTGATAAGGGTTTGCGCA
GACTCCACTGCCTTCTCACCACCGATTTCTGAAGTCTTGCCCTTCATGGGCTCATCGCCGCCATCCTTCAGCAGACTGAT
CGGCTGTTTCTGTTCTGATGTTGAGGTCATTGTGCTGGGCTGCTCAGATGTTGTCTCTGCTGGAATGATCATAGGAACAG
GCCCATCCTTCGACTCACTGTTGTTTCTAAACGGTTGATCATGGTTGTGCTTACCTTCATAGGTCACAACAATATTGTTA
TCATCGTCTGGTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis