Browse Element(s) Details


OsAffx.593.1.S1_at

Description gb:XM_353941.1
DB_XREF= gi:35189315
TID=OsAffx.593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g164101/11hypothetical protein
LOC_Os08g236541/11retrotransposon protein, putative, unclassified
LOC_Os10g082401/11hypothetical protein
LOC_Os08g198901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16360NANA4+8874213..8875381retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16370NANA4+8875763..8881858retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16380NANA4+8882174..8885114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16390OsAffx.3813.1.S1_at1/114+8886569..8888203hypothetical protein
LOC_Os04g16400OsAffx.20553.1.S1_at1/114+8888684..8893474retrotransposon protein, putative, unclassified
LOC_Os04g16400OsAffx.22699.1.S1_x_at1/114+8888684..8893474retrotransposon protein, putative, unclassified
LOC_Os04g16410OsAffx.593.1.S1_at1/114+8897829..8900462hypothetical protein
LOC_Os04g16420NANA4+8904029..8907149retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g16430NANA4+8910203..8916873retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g16440NANA4+8923995..8924756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.593.1.S1_at--1067--6532Chr02:16047339..16047363 (25 bp)
GATTTAGTTCTTTCTCGCTTATTAA
NONE
OsAffx.593.1.S1_at--69--6732Chr02:16047345..16047369 (25 bp)
GTTCTTTCTCGCTTATTAATGACTG
NONE
OsAffx.593.1.S1_at--795--3672Chr02:16047348..16047372 (25 bp)
CTTTCTCGCTTATTAATGACTGCCG
NONE
OsAffx.593.1.S1_at--776--48932Chr12:24831707..24831730 (24 bp)
GCTTATTAATGACTGCCGATCGATG
NONE
OsAffx.593.1.S1_at--324--4791Chr06:610423..610447 (25 bp)
GCTCCAAGATTAATGATATGCCATC
NONE
OsAffx.593.1.S1_at--300--9771Chr06:610413..610437 (25 bp)
TAATGATATGCCATCGGCACCCAAC
NONE
OsAffx.593.1.S1_at--636--7114Chr12:20313295..20313743 (25 bp)
GTCATCTTCGGGTTCGCACAGCCGA
NONE
OsAffx.593.1.S1_at--608--9431Chr06:608887..608911 (25 bp)
TCGGGTTCGCACAGCCGAGGGCTAC
NONE
OsAffx.593.1.S1_at--780--10631Chr06:608882..608906 (25 bp)
TTCGCACAGCCGAGGGCTACCTCGT
NONE
OsAffx.593.1.S1_at--374--3153Chr12:20313349..20313373 (25 bp)
AATTCCGCCATCGAAGGCCGTCGTT
NONE
OsAffx.593.1.S1_at--823--7452Chr06:608710..608734 (25 bp)
GTGTCCTGGAGCTCGGCCGCTGTTC
NONE
Target Sequence 
GATTTAGTTCTTTCTCGCTTATTAATGACTGCCGATCGATGCATATATGACATCGGCTCCAAGATTAATGATATGCCATC
GGCACCCAACCGATCGGCTATCGTTTATGGATTTAACCACGCCGCCCACGCCGACAACCGCCGAAACCGCGCGCACCGCC
GCCGTTTCCCACCCTTCCCGCGCTCACTCCTCCCCACTCCGTGCCGCGCCCACGTCGTCGCCCCCTCTCTGCTCCTCCCG
CTCTCGCGCGCGCCCCGCAAGGGCGTGGTTCGCGCCGCCGCCGAGCCGCACCGTCGTCATCTTCGGGTTCGCACAGCCGA
GGGCTACCTCGTCTACCCCTCCTCCATCGAATTCCGCCATCGAAGGCCGTCGTTCGTCGCGTTCCGGGTGTCCTGGAGCT
CGGCCGCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis