Browse Element(s) Details


OsAffx.5973.1.S1_at

Description tigr:9636.m02886
TID=OsAffx.5973.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2914011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29100Os.33962.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100Os.33962.1.S2_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29100OsAffx.20866.1.S1_at11/118+17681656..17684779SAM domain family protein, expressed
LOC_Os08g29110Os.35567.1.S1_at10/118+17685599..17687678Thioredoxin family protein, expressed
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os08g29160Os.14369.1.A1_a_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29160Os.14369.1.A2_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29170Os.14369.2.S1_at11/118+17722838..17724773Quinone oxidoreductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5973.1.S1_at--24--4651Chr08:17709671..17709695 (25 bp)
GCGTTTTGTCATATTGTAGATGTCC
LOC_Os08g29140
OsAffx.5973.1.S1_at--783--7131Chr08:17709664..17709688 (25 bp)
GTCATATTGTAGATGTCCAAGGTGG
LOC_Os08g29140
OsAffx.5973.1.S1_at--1132--10531Chr08:17709658..17709682 (25 bp)
TTGTAGATGTCCAAGGTGGTGACTG
LOC_Os08g29140
OsAffx.5973.1.S1_at--990--2311Chr08:17709129..17709153 (25 bp)
AAAGGTGGGTGACTACAGACGCTAC
LOC_Os08g29140
OsAffx.5973.1.S1_at--532--7491Chr08:17709125..17709149 (25 bp)
GTGGGTGACTACAGACGCTACCGAC
LOC_Os08g29140
OsAffx.5973.1.S1_at--418--7771Chr08:17709122..17709146 (25 bp)
GGTGACTACAGACGCTACCGACAAG
LOC_Os08g29140
OsAffx.5973.1.S1_at--471--5711Chr08:17709119..17709143 (25 bp)
GACTACAGACGCTACCGACAAGCTG
LOC_Os08g29140
OsAffx.5973.1.S1_at--604--2131Chr08:17709115..17709139 (25 bp)
ACAGACGCTACCGACAAGCTGGATA
LOC_Os08g29140
OsAffx.5973.1.S1_at--929--5791Chr08:17709112..17709136 (25 bp)
GACGCTACCGACAAGCTGGATATCG
LOC_Os08g29140
OsAffx.5973.1.S1_at--907--4831Chr08:17709109..17709133 (25 bp)
GCTACCGACAAGCTGGATATCGATG
LOC_Os08g29140
OsAffx.5973.1.S1_at--818--5611Chr08:17709103..17709127 (25 bp)
GACAAGCTGGATATCGATGGGCGCA
LOC_Os08g29140
Target Sequence 
GCGTTTTGTCATATTGTAGATGTCCAAGGTGGTGACTGGCGGAGGAAGAGAAAGGTGGGTGACTACAGACGCTACCGACA
AGCTGGATATCGATGGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis