Browse Element(s) Details


OsAffx.5975.1.S1_at

Description tigr:9636.m02908
TID=OsAffx.5975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2931011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29290NANA8+17833596..17841001transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29300NANA8+17844718..17845371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29310OsAffx.5975.1.S1_at11/118+17851607..17853022hypothetical protein
LOC_Os08g29310Os.11380.1.S1_x_at1/118+17851607..17853022hypothetical protein
LOC_Os08g29320OsAffx.32171.2.S1_at11/118+17855432..17856104hypothetical protein
LOC_Os08g29330OsAffx.29415.1.S1_at10/118+17861094..17861608hypothetical protein
LOC_Os08g29340OsAffx.29416.1.S1_at10/118+17862857..17864777hypothetical protein
LOC_Os08g29350OsAffx.17224.1.S1_at11/118+17865710..17867344hypothetical protein
LOC_Os08g29360NANA8+17874268..17879037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5975.1.S1_at--116--10671Chr08:17852607..17852631 (25 bp)
TTCCTCGGCTTGTCAATGCTAGCAA
LOC_Os08g29310
OsAffx.5975.1.S1_at--939--8231Chr08:17852568..17852592 (25 bp)
GGCACCGTTTACCTTCTTGAAGACT
LOC_Os08g29310
OsAffx.5975.1.S1_at--1059--2751Chr08:17852549..17852573 (25 bp)
AAGACTTTGCTATTGGATCCCTCAT
LOC_Os08g29310
OsAffx.5975.1.S1_at--715--4531Chr08:17852135..17852290 (25 bp)
GCCCGTTCTCTCGAAAAGCTACTAA
LOC_Os08g29310
OsAffx.5975.1.S1_at--1--2351Chr08:17852111..17852135 (25 bp)
AAAGAAGTGCTCGTCCGTTGCATGG
LOC_Os08g29310
OsAffx.5975.1.S1_at--1014--792Chr09:12419748..12419767 (20 bp)
ATGGGCTTTGCAATACCCCTGAAGA
NONE
OsAffx.5975.1.S1_at--1153--1351Chr08:17852031..17852055 (25 bp)
AGAGCCATGGCTTCTGGCAACTTGA
LOC_Os08g29310
OsAffx.5975.1.S1_at--752--8711Chr08:17851867..17851891 (25 bp)
TGTCTTTTGGTCTACACACCTTTAC
LOC_Os08g29310
OsAffx.5975.1.S1_at--298--5571Chr08:17851793..17851817 (25 bp)
GAAATCAACCATTCTCGATCGTTTT
LOC_Os08g29310
OsAffx.5975.1.S1_at--323--10391Chr08:17851769..17851793 (25 bp)
TTTTCCCAGTGGCAGACCTACATAT
LOC_Os08g29310
OsAffx.5975.1.S1_at--78--8131Chr08:17851658..17851682 (25 bp)
GGACTTTGCAAAATTCACTCTTAGG
LOC_Os08g29310
Target Sequence 
TTCCTCGGCTTGTCAATGCTAGCAAGGGCGACACCCTCGGGCACCGTTTACCTTCTTGAAGACTTTGCTATTGGATCCCT
CATTCAACTCCACATCAAGGGAGCTCCCTGCCCGTTCTCTCGAAAAGCTACTAAAAGAAGTGCTCGTCCGTTGCATGGGC
TTTGCAATACCCCTGAAGAGGACATCATATTGAAAAACATCTTTTCACCAGAAAGAGCCATGGCTTCTGGCAACTTGAGG
GGCCTCCAGAGAGTAATGCTTAGGGAGAAGAGCCTTGTTTTGTACTCTGAGATCAATGACACCCAATCCCCCCCCCTTGT
CTTTTGGTCTACACACCTTTACCAAAGAGAGAAATCAACCATTCTCGATCGTTTTTTTCCCAGTGGCAGACCTACATATG
TGAAAGGCAATGATCCAATGGAACAGCCAAAAGTAGCAGCCAACAGCTGTGATTTTTCTTCAGAGATATTCAGAGGGATC
ATACAGGACTTTGCAAAATTCACTCTTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis