Browse Element(s) Details


OsAffx.6021.1.S1_at

Description tigr:9636.m03468
TID=OsAffx.6021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3457010/11D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34550Os.49274.1.S1_at11/118+21567415..21569582Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g34560OsAffx.23616.2.S1_at11/118+21573616..21574363hypothetical protein
LOC_Os08g34570OsAffx.6021.1.S1_at10/118+21575758..21576557D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os08g34580Os.6139.2.S1_s_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed
LOC_Os08g34580Os.6139.1.S1_at11/118+21589425..21593268trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6021.1.S1_at--682--9071Chr08:21575788..21575812 (25 bp)
TGCCAGGCTACAATCGTTTTGGGCC
LOC_Os08g34570
OsAffx.6021.1.S1_at--186--9851Chr08:21575796..21575820 (25 bp)
TACAATCGTTTTGGGCCTGTGGGCC
LOC_Os08g34570
OsAffx.6021.1.S1_at--865--3891Chr08:21575812..21575836 (25 bp)
CTGTGGGCCTTTTATTCGGTGTATT
LOC_Os08g34570
OsAffx.6021.1.S1_at--444--4451Chr08:21575818..21575842 (25 bp)
GCCTTTTATTCGGTGTATTGTTACT
LOC_Os08g34570
OsAffx.6021.1.S1_at--683--6871Chr08:21575832..21575856 (25 bp)
GTATTGTTACTTTGTCACTTCTCCA
LOC_Os08g34570
OsAffx.6021.1.S1_at--323--8791Chr08:21575836..21575860 (25 bp)
TGTTACTTTGTCACTTCTCCAGCTT
LOC_Os08g34570
OsAffx.6021.1.S1_at--762--2051Chr08:21575848..21575872 (25 bp)
ACTTCTCCAGCTTGGGCCGACGAGG
LOC_Os08g34570
OsAffx.6021.1.S1_at--336--5771Chr08:21575866..21575887 (22 bp)
GACGAGGTCTCGTATGATTATTCGG
LOC_Os08g34570
OsAffx.6021.1.S1_at--1054--3771Chr08:21575874..21576269 (25 bp)
CTCGTATGATTATTCGGTGGCCGTC
LOC_Os08g34570
OsAffx.6021.1.S1_at--335--4031NONE
CGTATGATTATTCGGTGGCCGTCGA
NONE
OsAffx.6021.1.S1_at--50--8512Chr08:21576503..21576527 (25 bp)
TGGCATGCGCGCTGACAGCAGAGAC
LOC_Os08g34570
Target Sequence 
TGCCAGGCTACAATCGTTTTGGGCCTGTGGGCCTTTTATTCGGTGTATTGTTACTTTGTCACTTCTCCAGCTTGGGCCGA
CGAGGTCTCGTATGATTATTCGGTGGCCGTCGACGTCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCC
GCGTCGGCGCCGAGCTCCTCGACGCCGTCCCGTCGCTCCGCTGCATCATCACCATCAGCGCGGGGATCAACCACATCGAC
CTCCGCGAGTGCGCGTGTCGCGGCGTACAGGTCGTCAACGCCGGCGGGGTCTACTCCACCGATGTCGCCGACTACGCTGT
CGGCCCTGTTCGACGTGCTCGTCGTGGCATGCGCGCTGACAGCAGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis