Browse Element(s) Details


OsAffx.6107.1.S1_at

Description tigr:9636.m04241
TID=OsAffx.6107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CBS domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4174011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6107.1.S1_at--506--4671Chr08:26212495..26212519 (25 bp)
GCGGGTGATTCTTGGCGAGATCTCC
LOC_Os08g41740
OsAffx.6107.1.S1_at--495--871Chr08:26212425..26212449 (25 bp)
ATGGCGACCATGTCGGCGATGGACT
LOC_Os08g41740
OsAffx.6107.1.S1_at--103--3411Chr08:26212258..26212282 (25 bp)
CAGCAGCAGGAAGATCGGGTTCTCG
LOC_Os08g41740
OsAffx.6107.1.S1_at--1080--8371Chr08:26212234..26212258 (25 bp)
GGCGAGCTTGGCGAACATGATCATG
LOC_Os08g41740
OsAffx.6107.1.S1_at--790--5491Chr08:26212222..26212246 (25 bp)
GAACATGATCATGGTGAGCCACCGG
LOC_Os08g41740
OsAffx.6107.1.S1_at--1071--8171Chr08:26212199..26212223 (25 bp)
GGAAGAACCGGGTGCTGACCTGCAA
LOC_Os08g41740
OsAffx.6107.1.S1_at--546--7311Chr08:26212188..26212212 (25 bp)
GTGCTGACCTGCAAGGCGACGAGCT
LOC_Os08g41740
OsAffx.6107.1.S1_at--535--1291Chr08:26212142..26212166 (25 bp)
AGATGCTGTCGCACAGGGCCACGCA
LOC_Os08g41740
OsAffx.6107.1.S1_at--1056--4351Chr08:26212124..26212148 (25 bp)
CCACGCATCTCTGGGTCGTCGAGGA
LOC_Os08g41740
OsAffx.6107.1.S1_at--182--2311Chr08:26212086..26212110 (25 bp)
AAAGGCGCCGTCTTGGTTGGCATGA
LOC_Os08g41740
OsAffx.6107.1.S1_at--31--10851Chr08:26212061..26212085 (25 bp)
TTGGGTACATGGAGATCCTCAGGGC
LOC_Os08g41740
Target Sequence 
GCGGGTGATTCTTGGCGAGATCTCCGGCCACAAGCTGTGGAAGAAAGACTACGCGGCCGCCGCGGAGGCGATGGCGACCA
TGTCGGCGATGGACTTCGCCACCGGCGTCGACGAGAGCGGGCCGTCGCCTACCGCCACCGCCGCCGCCGCCGCTGGCAAT
GTCGGCGGCGGCGGCGCGCGTGCGCGGATGGGGAGCGTCGAGGAGGAGATCGCGCCTGTGCCGAGGCTGACGAGGTTCAG
CAGCAGGAAGATCGGGTTCTCGGCGAGCTTGGCGAACATGATCATGGTGAGCCACCGGAAGAACCGGGTGCTGACCTGCA
AGGCGACGAGCTCGCTCGCCGCCGTCATGGCGCAGATGCTGTCGCACAGGGCCACGCATCTCTGGGTCGTCGAGGATGGC
GACGCCGACAAAGGCGCCGTCTTGGTTGGCATGATTGGGTACATGGAGATCCTCAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis