Browse Element(s) Details


OsAffx.6108.1.S1_at

Description tigr:9636.m04243
TID=OsAffx.6108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4176011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein
LOC_Os08g41730Os.53150.1.S1_at10/118+26209510..26211681Proteasome subunit beta type 1, putative, expressed
LOC_Os08g41740OsAffx.6107.1.S1_at11/118+26212027..26214380hypothetical protein
LOC_Os08g41750OsAffx.17463.1.S1_at11/118+26218338..26219453F-box domain containing protein
LOC_Os08g41760OsAffx.6108.1.S1_at11/118+26223352..26224461F-box domain containing protein, expressed
LOC_Os08g41770OsAffx.17464.1.S1_at11/118+26234100..26235778hypothetical protein
LOC_Os08g41780Os.54937.1.S1_at11/118+26246575..26251798ab-hydrolase associated lipase region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6108.1.S1_at--437--9331Chr08:26223636..26223660 (25 bp)
TCGCCGGGCTCATGCCAATGGATCT
LOC_Os08g41760
OsAffx.6108.1.S1_at--658--5791Chr08:26223610..26223634 (25 bp)
GACGAACACCGTCTGTGTCAACGAG
LOC_Os08g41760
OsAffx.6108.1.S1_at--404--1791Chr08:26223603..26223627 (25 bp)
ACCGTCTGTGTCAACGAGATGACCA
LOC_Os08g41760
OsAffx.6108.1.S1_at--623--6031Chr08:26223588..26223612 (25 bp)
GAGATGACCATCAATGGCGGGCTCT
LOC_Os08g41760
OsAffx.6108.1.S1_at--465--691Chr08:26223585..26223609 (25 bp)
ATGACCATCAATGGCGGGCTCTGGG
LOC_Os08g41760
OsAffx.6108.1.S1_at--568--7831Chr08:26223550..26223574 (25 bp)
GGTCAAGTTCTTGGCGTTCCACCCG
LOC_Os08g41760
OsAffx.6108.1.S1_at--95--1911Chr08:26223515..26223539 (25 bp)
ACGTGGTGTACCTCTCGTCGCCGGA
LOC_Os08g41760
OsAffx.6108.1.S1_at--130--8651Chr08:26223434..26223458 (25 bp)
TGGGAGCTGAGCACCATGTCGTCAG
LOC_Os08g41760
OsAffx.6108.1.S1_at--321--8911Chr08:26223427..26223451 (25 bp)
TGAGCACCATGTCGTCAGGTTTTGG
LOC_Os08g41760
OsAffx.6108.1.S1_at--827--3491Chr08:26223420..26223444 (25 bp)
CATGTCGTCAGGTTTTGGTTGCTTG
LOC_Os08g41760
OsAffx.6108.1.S1_at--641--10591Chr08:26223393..26223417 (25 bp)
TTCTCCTCGGGTTTGATGAGCTGCC
LOC_Os08g41760
Target Sequence 
TCGCCGGGCTCATGCCAATGGATCTTGACGAACACCGTCTGTGTCAACGAGATGACCATCAATGGCGGGCTCTGGGCGGC
AAGCGAGGTCAAGTTCTTGGCGTTCCACCCGGACATGGCCGACGTGGTGTACCTCTCGTCGCCGGAGGGGAAGGTGGCGA
GCTGTGACATGAGGAGGAAGGAGATGGTGAGCTCGTGGAAGCTGGGAGCTGAGCACCATGTCGTCAGGTTTTGGTTGCTT
GGTTTCTCCTCGGGTTTGATGAGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis