Browse Element(s) Details


OsAffx.6388.1.A1_x_at

Description tigr:9637.m02122
TID=OsAffx.6388.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g247209/11hypothetical protein
LOC_Os10g226301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24710Os.38084.2.S1_x_at11/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24710Os.38084.1.S1_at10/119+14710642..14715764hydrolase, alpha/beta fold family protein, expressed
LOC_Os09g24720OsAffx.6388.1.A1_x_at9/119+14728630..14730118hypothetical protein
LOC_Os09g24720Os.5353.1.S1_at4/119+14728630..14730118hypothetical protein
LOC_Os09g24730OsAffx.30005.1.S1_at10/119+14730887..14732819hypothetical protein
LOC_Os09g24740NANA9+14737436..14742086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g24749NANA9+14744411..14744847NA
LOC_Os09g24760Os.28943.1.S1_x_at3/119+14749421..14752663retrotransposon protein, putative, unclassified
LOC_Os09g24770NANA9+14753593..14758908retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6388.1.A1_x_at--616--7214Chr09:13306664..13306683 (20 bp)
GTCGTATCGAGCCAAAGACGAAGAC
NONE
OsAffx.6388.1.A1_x_at--520--7253Chr03:31684815..31684839 (25 bp)
GTCCATCGCCGCTTATCTCCGGTCG
NONE
OsAffx.6388.1.A1_x_at--729--4174Chr03:31684869..31684893 (25 bp)
CCCTGACGGTCCCAGCAACCATGAA
NONE
OsAffx.6388.1.A1_x_at--1091--8973Chr03:31684920..31684944 (25 bp)
TGAACTCAGAGGTCGCGGATCCAAC
NONE
OsAffx.6388.1.A1_x_at--527--5473Chr03:31684921..31684945 (25 bp)
GAACTCAGAGGTCGCGGATCCAACC
NONE
OsAffx.6388.1.A1_x_at--854--3976Chr10:11427230..11427251 (22 bp)
CGAGTTTGGGTGCTCCAGATCCTGC
LOC_Os10g22630
OsAffx.6388.1.A1_x_at--609--10013Chr03:31684980..31685004 (25 bp)
TAGCTTCAGCGACGCCAGATCCGTT
NONE
OsAffx.6388.1.A1_x_at--869--10513Chr03:31684984..31685008 (25 bp)
TTCAGCGACGCCAGATCCGTTCGTG
NONE
OsAffx.6388.1.A1_x_at--45--1653Chr03:31684987..31685011 (25 bp)
AGCGACGCCAGATCCGTTCGTGAGG
NONE
OsAffx.6388.1.A1_x_at--107--7211Chr03:31685041..31685065 (25 bp)
GTCGTCGAGGTCAACATGTCGTGGG
NONE
OsAffx.6388.1.A1_x_at--848--1691Chr03:31685093..31685117 (25 bp)
ACCCCATTCTCGGTAGTCACTGCCG
NONE
Target Sequence 
GTCGTATCGAGCCAAAGACGAAGACAACGCCGGTGNCAGGACCATCGGCGAANGGGGCACCACNCCGCTGCCCAACGCCA
TCGACAAGCCCCTCCGTCCATCGCCGCTTATCTCCGGTCGACGACNAGCTTCTACATCCCCCACCCTCCCCCTGACGGTC
CCAGCAACCATGAACTCGGGGGCTCCAGATCNGGACACCNTGAACTCAGAGGTCGCGGATCCAACCATCCCGAGTTTGGG
TGCTCCAGATCCTGCNGTCCTAGCTTCAGCGACGCCAGATCCGTTCGTGAGGNANNNGGNNCNNNNNNNANNCNNNCCCA
CGTCGTCGAGGTCAACATGTCGTGGGGAGAGCAGGCGTCGGCTGTCCCCTTCCACCCCATTCTCGGTAGTCACTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6388.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis