Browse Element(s) Details


OsAffx.6408.1.S1_at

Description tigr:9637.m02325
TID=OsAffx.6408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-regulated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2661011/11Auxin responsive protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26590NANA9+16123900..16124478Auxin responsive protein, expressed
LOC_Os09g26600OsAffx.30043.1.S1_at11/119+16128616..16129068hypothetical protein
LOC_Os09g26610OsAffx.6408.1.S1_at11/119+16142734..16143534Auxin responsive protein, expressed
LOC_Os09g26620Os.12111.1.S1_at11/119+16152180..16154165Dormancy/auxin associated protein, expressed
LOC_Os09g26630Os.26886.3.S1_x_at7/119+16156642..16158220transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26640NANA9+16161019..16166129retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6408.1.S1_at--1003--8871Chr09:16143287..16143311 (25 bp)
TGAGGCGGCTGCAGAGGACGGTGAC
LOC_Os09g26610
OsAffx.6408.1.S1_at--503--5751Chr09:16143271..16143295 (25 bp)
GACGGTGACGGTGGACTCCGACGAC
LOC_Os09g26610
OsAffx.6408.1.S1_at--824--1851Chr09:16143251..16143275 (25 bp)
ACGACGAGAGCTGCCAGAGCCCGGA
LOC_Os09g26610
OsAffx.6408.1.S1_at--115--4071Chr09:16143058..16143082 (25 bp)
CGAGACCGAGGCCTTCAAGTACATC
LOC_Os09g26610
OsAffx.6408.1.S1_at--600--5811Chr09:16143055..16143079 (25 bp)
GACCGAGGCCTTCAAGTACATCCTC
LOC_Os09g26610
OsAffx.6408.1.S1_at--226--4531Chr09:16142953..16142977 (25 bp)
GCCGCCGCGCGACTAGTAGCAGTTT
LOC_Os09g26610
OsAffx.6408.1.S1_at--1148--4591Chr09:16142945..16142969 (25 bp)
GCGACTAGTAGCAGTTTCTTCGATT
LOC_Os09g26610
OsAffx.6408.1.S1_at--973--6811Chr09:16142932..16142956 (25 bp)
GTTTCTTCGATTGCTTTATTAATTA
LOC_Os09g26610
OsAffx.6408.1.S1_at--257--3851Chr09:16142812..16142836 (25 bp)
CTGCATTTTGTTGTACGCTGTTGTA
LOC_Os09g26610
OsAffx.6408.1.S1_at--708--6631Chr09:16142803..16142827 (25 bp)
GTTGTACGCTGTTGTAACACAGTAT
LOC_Os09g26610
OsAffx.6408.1.S1_at--242--1831Chr09:16142798..16142822 (25 bp)
ACGCTGTTGTAACACAGTATTCCTA
LOC_Os09g26610
Target Sequence 
TGAGGCGGCTGCAGAGGACGGTGACGGTGGACTCCGACGACGAGAGCTGCCAGAGCCCGGAGCCGCCGGCGGACGTGCCG
AGGGGGTACTGCCCGGTGTACGTGGGGCCGGAGCAGCGGCGGTTCGTGATCCCGACGAGGTACCTCGGCCACCCGGTGTT
CCGGCTGCTGCTGGAGAAGGCGGAGGAGGAGTTCGGCTTCTGCCACCAGGGCGCGCTCGCCATCCCCTGCGAGACCGAGG
CCTTCAAGTACATCCTCCAGTGCGTCGAGCGCCACGACAACGGCCTCGCCGCCGGCGACGTCGTCGACGGCGTCGTCGAC
GTCAACGACCGTGCGCCGCCGCGCGACTAGTAGCAGTTTCTTCGATTGCTTTATTAATTAATTACTTAATTAATTAATTA
GCTCGCGATCGAGACGGAGCTAGCCGTCAGAAATGATTAATCGTAATCCATGGGGGTTGTAAACTTGTAATGGAACTGCA
TTTTGTTGTACGCTGTTGTAACACAGTATTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis