Browse Element(s) Details


OsAffx.655.1.S1_x_at

Description gb:NM_193833.1
DB_XREF= gi:34914749
GEN=P0493G01.12
TID=OsAffx.655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0493G01.12 (P0493G01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g516502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g124602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g282441/11retrotransposon protein, putative, unclassified
LOC_Os04g036801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g233101/11hypothetical protein
LOC_Os10g251001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51640Os.13766.1.S1_at11/111+30005938..30009857expressed protein
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.655.1.S1_x_at--1026--1793Chr10:12185245..12185268 (24 bp)
ACCCCGCAACCGTCATCAGGGAGTG
NONE
OsAffx.655.1.S1_x_at--1045--35510Chr12:8561250..8561274 (25 bp)
CATCAGGGAGTGATCTGGAGCGTCC
NONE
OsAffx.655.1.S1_x_at--712--85323Chr10:12185272..12185296 (25 bp)
TGGAGCGTCCATGCCAAAACCTGGG
NONE
OsAffx.655.1.S1_x_at--761--46522Chr10:12185276..12185300 (25 bp)
GCGTCCATGCCAAAACCTGGGATCA
NONE
OsAffx.655.1.S1_x_at--56--33923Chr11:12684519..12684542 (24 bp)
CATGCCAAAACCTGGGATCAACGGC
NONE
OsAffx.655.1.S1_x_at--588--371Chr01:15563607..15563631 (25 bp)
ATCAACGGCGATCACCAGTGTTCGG
NONE
OsAffx.655.1.S1_x_at--800--1931Chr01:15563611..15563635 (25 bp)
ACGGCGATCACCAGTGTTCGGACGA
NONE
OsAffx.655.1.S1_x_at--16--4611Chr01:15563614..15563638 (25 bp)
GCGATCACCAGTGTTCGGACGAACT
NONE
OsAffx.655.1.S1_x_at--1152--6692Chr01:15563626..15563650 (25 bp)
GTTCGGACGAACTGTCACGCCCGGA
NONE
OsAffx.655.1.S1_x_at--425--237243Chr12:8892091..8892299 (25 bp)
AAACGCTTACATGCAGCTTGACCAG
NONE
OsAffx.655.1.S1_x_at--962--987215Chr12:8892287..8892306 (20 bp)
TACATGCAGCTTGACCAGGGCTACA
NONE
Target Sequence 
ACCCCGCAACCGTCATCAGGGAGTGATCTGGAGCGTCCATGCCAAAACCTGGGATCAACGGCGATCACCAGTGTTCGGAC
GAACTGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGCAGCTTGACCAGGGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.655.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis