Browse Element(s) Details


OsAffx.6659.1.S1_at

Description tigr:9638.m01176
TID=OsAffx.6659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1338011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13350NANA10+6971729..6976617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13360NANA10+6978864..6979517retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13370OsAffx.12509.1.S1_at11/1110+6984519..6990745retrotransposon protein, putative, unclassified
LOC_Os10g13380OsAffx.6659.1.S1_at11/1110+6992445..6993028hypothetical protein
LOC_Os10g13390OsAffx.21897.5.S1_x_at4/1110+6995065..6997989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13400Os.10703.2.S1_x_at1/1110+6998557..7004415retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13410Os.55650.1.A1_at1/1110+7008321..7011006Zinc knuckle family protein
LOC_Os10g13420NANA10+7011157..7013436retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6659.1.S1_at--1001--1071Chr10:6992804..6992828 (25 bp)
AGGGCACACCAAATCAGCCGTGCTG
LOC_Os10g13380
OsAffx.6659.1.S1_at--523--191Chr10:6992760..6992784 (25 bp)
ATTTCGCCGGCGCTTACGTCTGTGT
LOC_Os10g13380
OsAffx.6659.1.S1_at--476--3631Chr10:6992748..6992772 (25 bp)
CTTACGTCTGTGTGGGAGGTGGAAA
LOC_Os10g13380
OsAffx.6659.1.S1_at--855--3291Chr10:6992721..6992745 (25 bp)
CAAATGCGGTGGCAATGGGAATCAT
LOC_Os10g13380
OsAffx.6659.1.S1_at--140--791Chr10:6992707..6992731 (25 bp)
ATGGGAATCATGTGTGGCGTTCACT
LOC_Os10g13380
OsAffx.6659.1.S1_at--96--9631Chr10:6992700..6992724 (25 bp)
TCATGTGTGGCGTTCACTAGGGAGC
LOC_Os10g13380
OsAffx.6659.1.S1_at--1097--3431Chr10:6992627..6992651 (25 bp)
CAGATTGAGCAGATTGGTGGGCGTA
LOC_Os10g13380
OsAffx.6659.1.S1_at--434--5891Chr10:6992594..6992618 (25 bp)
GAGCGGTTGGCGGTGTTCTTCCATT
LOC_Os10g13380
OsAffx.6659.1.S1_at--1151--10851Chr10:6992588..6992612 (25 bp)
TTGGCGGTGTTCTTCCATTTTTCAC
LOC_Os10g13380
OsAffx.6659.1.S1_at--704--4171Chr10:6992574..6992598 (25 bp)
CCATTTTTCACAGATCGGGGGCGGA
LOC_Os10g13380
OsAffx.6659.1.S1_at--895--1371Chr10:6992538..6992562 (25 bp)
AGAGCCGGCGATTGGGAGCACTGGA
LOC_Os10g13380
Target Sequence 
AGGGCACACCAAATCAGCCGTGCTGCCCCTGCCTGCCCGCGGCCATTTCGCCGGCGCTTACGTCTGTGTGGGAGGTGGAA
AAGCAAATGCGGTGGCAATGGGAATCATGTGTGGCGTTCACTAGGGAGCGGAGGCAGAAACGCGGATGTCGTGGCTGTGG
CGGCGGCGCTGGCGGCGCAGATTGAGCAGATTGGTGGGCGTAGGGAGGCAGAGCGGTTGGCGGTGTTCTTCCATTTTTCA
CAGATCGGGGGCGGAGCGGTGGAGGGAGAGCCGGCGATTGGGAGCACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis