Browse Element(s) Details


OsAffx.6683.1.S1_at

Description tigr:9638.m01453
TID=OsAffx.6683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1760011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17580NANA10+8548074..8549847retrotransposon, putative, centromere-specific
LOC_Os10g17590NANA10+8551353..8553053retrotransposon, putative, centromere-specific
LOC_Os10g17600OsAffx.6683.1.S1_at11/1110+8560702..8562492hypothetical protein
LOC_Os10g17610Os.45212.1.S1_x_at10/1110+8564391..8570345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17620OsAffx.25156.1.S1_x_at11/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.4.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.5.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6683.1.S1_at--858--4531Chr10:8561718..8561742 (25 bp)
GCCCCTGGTTTCGTCAATGAGTATT
LOC_Os10g17600
OsAffx.6683.1.S1_at--292--3271Chr10:8561685..8561709 (25 bp)
CAAAGCATGATTTTTAAGGCCGAGA
LOC_Os10g17600
OsAffx.6683.1.S1_at--201--5431Chr10:8561662..8561686 (25 bp)
GAAGCCAAACCATAGGGACCTCCAT
LOC_Os10g17600
OsAffx.6683.1.S1_at--798--10071Chr10:8561650..8561674 (25 bp)
TAGGGACCTCCATGATAGGCCACAG
LOC_Os10g17600
OsAffx.6683.1.S1_at--521--4371Chr10:8561631..8561655 (25 bp)
CCACAGCCTCCACAAATATCTTATG
LOC_Os10g17600
OsAffx.6683.1.S1_at--1158--5471Chr10:8561604..8561628 (25 bp)
GAACATCAGGCCATCGAGGTAACTC
LOC_Os10g17600
OsAffx.6683.1.S1_at--1140--4051Chr10:8561590..8561614 (25 bp)
CGAGGTAACTCCTTGTTGGCTGAAT
LOC_Os10g17600
OsAffx.6683.1.S1_at--598--4751Chr10:8561154..8561178 (25 bp)
GCTGAAGGTATATCTATTGGCCATT
LOC_Os10g17600
OsAffx.6683.1.S1_at--330--4431Chr10:8561135..8561159 (25 bp)
GCCATTTCTTCTTTTTCGGGATCAT
LOC_Os10g17600
OsAffx.6683.1.S1_at--66--9991Chr10:8561107..8561131 (25 bp)
TAGCGAAGGCGCTGGAACTGCTTCT
LOC_Os10g17600
OsAffx.6683.1.S1_at--470--10031Chr10:8560732..8561101 (25 bp)
TAGAAAGGGATTTTCACATCGCGGT
LOC_Os10g17600
Target Sequence 
GCCCCTGGTTTCGTCAATGAGTATTTTGAGATCCAAAGCATGATTTTTAAGGCCGAGAAGCCAAACCATAGGGACCTCCA
TGATAGGCCACAGCCTCCACAAATATCTTATGGAGAACATCAGGCCATCGAGGTAACTCCTTGTTGGCTGAATAGCTCAG
ATAAGCACATAGCTGAAGGTATATCTATTGGCCATTTCTTCTTTTTCGGGATCATCGTTAGCGAAGGCGCTGGAACTGCT
TCTCATTATAGAAAGGGATTTTCACATCGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis