Browse Element(s) Details


OsAffx.6700.1.S1_at

Description tigr:9638.m01601
TID=OsAffx.6700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1909011/11hypothetical protein
LOC_Os01g270601/11hypothetical protein
LOC_Os02g146201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19050NANA10+9368690..9370940hypothetical protein
LOC_Os10g19064OsAffx.8272.1.S1_at11/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19064OsAffx.8980.1.S1_at1/1110+9381377..9384396retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19080Os.2987.3.S1_x_at6/1110+9385243..9387918retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19090OsAffx.6700.1.S1_at11/1110+9392508..9392864hypothetical protein
LOC_Os10g19100OsAffx.18296.1.S1_at10/1110+9393041..9395481hypothetical protein
LOC_Os10g19110OsAffx.18297.1.S1_at11/1110+9396632..9398816Cytochrome P450, putative
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6700.1.S1_at--370--3171Chr10:9392797..9392821 (25 bp)
AATTGACACGACAAATTAGGCCAAA
LOC_Os10g19090
OsAffx.6700.1.S1_at--594--251Chr10:9392747..9392771 (25 bp)
ATAGAGGAGGCCACCTGTCGAATTT
LOC_Os10g19090
OsAffx.6700.1.S1_at--724--871Chr10:9392740..9392764 (25 bp)
AGGCCACCTGTCGAATTTGGGCTAG
LOC_Os10g19090
OsAffx.6700.1.S1_at--64--5231Chr10:9392728..9392752 (25 bp)
GAATTTGGGCTAGGCTGGCCAAGCC
LOC_Os10g19090
OsAffx.6700.1.S1_at--632--10092Chr01:17615544..17615563 (20 bp)
TAGGCTGGCCAAGCCCATGGTTCGG
NONE
OsAffx.6700.1.S1_at--1043--631Chr10:9392632..9392656 (25 bp)
ATGACGTTAGGAGGGCAATGCCGAC
LOC_Os10g19090
OsAffx.6700.1.S1_at--832--1071Chr10:9392621..9392645 (25 bp)
AGGGCAATGCCGACCATTCCAACTA
LOC_Os10g19090
OsAffx.6700.1.S1_at--224--32937Chr11:9588500..9588524 (25 bp)
CACAACCGTCATTGGCAGCCTATTT
NONE
OsAffx.6700.1.S1_at--604--8252Chr03:23179592..23179611 (20 bp)
GGCAGCCTATTTAAGGAGCTCGTCT
NONE
OsAffx.6700.1.S1_at--818--8071Chr10:9392568..9392592 (25 bp)
GGAGCTCGTCTTCTCACTTTCTCCA
LOC_Os10g19090
OsAffx.6700.1.S1_at--71--2051Chr10:9392553..9392577 (25 bp)
ACTTTCTCCATACACTTCAAGCAAA
LOC_Os10g19090
Target Sequence 
AATTGACACGACAAATTAGGCCAAAATTCACAAGTCTGCGGAGAGGAGCAATAGAGGAGGCCACCTGTCGAATTTGGGCT
AGGCTGGCCAAGCCCATGGTTCGGCCGATCCCACCGTGGCTCCGTTCGATGCAGGGTTTGGATGGACGGCGTGGATCACT
CCCCAATGACGTTAGGAGGGCAATGCCGACCATTCCAACTACCACAACCGTCATTGGCAGCCTATTTAAGGAGCTCGTCT
TCTCACTTTCTCCATACACTTCAAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis