Browse Element(s) Details


OsAffx.7078.1.S1_at

Description tigr:9639.m01088
TID=OsAffx.7078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1145011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein
LOC_Os11g11440OsAffx.18800.1.S1_s_at11/1111+6354529..6355370protein disulfide isomerase, putative
LOC_Os11g11450OsAffx.7078.1.S1_at11/1111+6357337..6358020hypothetical protein
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7078.1.S1_at--742--1531Chr11:6357460..6357484 (25 bp)
AGCATCAAGCTTGCATCCAGGGTGC
LOC_Os11g11450
OsAffx.7078.1.S1_at--769--3471Chr11:6357477..6357501 (25 bp)
CAGGGTGCGCAGATCCAGGGCTCAT
LOC_Os11g11450
OsAffx.7078.1.S1_at--965--4331Chr11:6357491..6357515 (25 bp)
CCAGGGCTCATGTTGGTGGAGACAA
LOC_Os11g11450
OsAffx.7078.1.S1_at--193--6491Chr11:6357545..6357569 (25 bp)
GATACCGCACAGTACCGAAGCAGGA
LOC_Os11g11450
OsAffx.7078.1.S1_at--362--5391Chr11:6357595..6357619 (25 bp)
GAAGCAGAGCGTGAGGTCCACAGCT
LOC_Os11g11450
OsAffx.7078.1.S1_at--795--9211Chr11:6357611..6357635 (25 bp)
TCCACAGCTGGGAACAGGGAGTTGT
LOC_Os11g11450
OsAffx.7078.1.S1_at--828--4091Chr11:6357807..6357831 (25 bp)
CGAAAATGAGCATTGGTGGCGCGTA
LOC_Os11g11450
OsAffx.7078.1.S1_at--1065--7211Chr11:6357874..6357898 (25 bp)
GTCGAGGGCTTCTTGCCGTATGCCA
LOC_Os11g11450
OsAffx.7078.1.S1_at--139--10151Chr11:6357892..6357916 (25 bp)
TATGCCACCAATCCGGACACCATTG
LOC_Os11g11450
OsAffx.7078.1.S1_at--1129--1731Chr11:6357910..6357934 (25 bp)
ACCATTGCCAGAGTTGCGAGTGTGA
LOC_Os11g11450
OsAffx.7078.1.S1_at--397--9291Chr11:6357956..6357980 (25 bp)
TCCGGGCACCATCACCGTGCTGGAA
LOC_Os11g11450
Target Sequence 
AGCATCAAGCTTGCATCCAGGGTGCGCAGATCCAGGGCTCATGTTGGTGGAGACAACGAGGTGGCTGTGGTAGGAGACAG
CGGCGGATACCGCACAGTACCGAAGCAGGAGGACGAGGCCGAGGTTGTGGACACTGAAGCAGAGCGTGAGGTCCACAGCT
GGGAACAGGGAGTTGTTGACGTGGAAGTAGGCGATGCGGAGCTTGGCCACAGAGGTGATGGGCGCGGAAGTGTTGAAGAG
GAAGGCGAGGCTGGTGTGGAGCGCGAGGAAGAGGAGCTGGAACATGAAGAGGGGAGAACGCGTGGAGGTAAGGGCACAGC
ACGGGTGGAGGCGGACGAGGACTGGGGCGAAAATGAGCATTGGTGGCGCGTAGGCGCTAGGCTGTATGGCGGGAGGAGAG
GCCGGCCGAGGTCCGTCGAGGGCTTCTTGCCGTATGCCACCAATCCGGACACCATTGCCAGAGTTGCGAGTGTGAGACAA
GATTGGGAGTGGCCGATCCGGGCACCATCACCGTGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis