Browse Element(s) Details


OsAffx.7098.1.S1_at

Description tigr:9639.m01205
TID=OsAffx.7098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1258010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12550OsAffx.8939.1.S1_x_at4/1111+7041422..7041876hypothetical protein
LOC_Os11g12550OsAffx.8939.1.S1_at2/1111+7041422..7041876hypothetical protein
LOC_Os11g12560OsAffx.18821.1.S1_at11/1111+7051975..7056871Leucine Rich Repeat family protein
LOC_Os11g12570OsAffx.18822.1.S1_at11/1111+7060805..7061872hypothetical protein
LOC_Os11g12580OsAffx.7098.1.S1_at10/1111+7062356..7064567hypothetical protein
LOC_Os11g12590OsAffx.30942.1.S1_at11/1111+7067884..7071059hypothetical protein
LOC_Os11g12600OsAffx.30943.1.S1_at11/1111+7074034..7074480hypothetical protein
LOC_Os11g12610NANA11+7079778..7080250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7098.1.S1_at--578--5711Chr11:7062387..7062411 (25 bp)
GACTCCCTGATGACATAGTTATTCC
LOC_Os11g12580
OsAffx.7098.1.S1_at--1062--271Chr11:7062401..7062425 (25 bp)
ATAGTTATTCCATTCACTGACAAGG
LOC_Os11g12580
OsAffx.7098.1.S1_at--855--3031Chr11:7062430..7062454 (25 bp)
AATCGGGAATGGACTACCACCACAT
LOC_Os11g12580
OsAffx.7098.1.S1_at--1117--8971Chr11:7062471..7062495 (25 bp)
TGAACTGTCCTGTGATTCTCCTAAG
LOC_Os11g12580
OsAffx.7098.1.S1_at--511--10591Chr11:7062486..7062510 (25 bp)
TTCTCCTAAGGAATCTTGATCCTCA
LOC_Os11g12580
OsAffx.7098.1.S1_at--899--5991Chr11:7062544..7062568 (25 bp)
GAGAGCTTTCCAGAATGACGCGATC
LOC_Os11g12580
OsAffx.7098.1.S1_at--1107--5791Chr11:7062560..7062584 (25 bp)
GACGCGATCAATGCGGAGATTGTTA
LOC_Os11g12580
OsAffx.7098.1.S1_at--60--6611NONE
GATTGTTAGCGTTACAGTCACCGAG
NONE
OsAffx.7098.1.S1_at--94--7111Chr11:7063185..7063209 (25 bp)
GTCACCGAGGTTTGGATTGCTGTGT
LOC_Os11g12580
OsAffx.7098.1.S1_at--758--4711Chr11:7063203..7063227 (25 bp)
GCTGTGTTGGCATATACCCTTAGTA
LOC_Os11g12580
OsAffx.7098.1.S1_at--511--6951Chr11:7063225..7063249 (25 bp)
GTAGACATCTTGGTTGGGCACCTTC
LOC_Os11g12580
Target Sequence 
GACTCCCTGATGACATAGTTATTCCATTCACTGACAAGGAAACAATCGGGAATGGACTACCACCACATATACTAAAGTTG
AAAGTGAACTGTCCTGTGATTCTCCTAAGGAATCTTGATCCTCACAATGGTCTATGCAATGGGACAAGGCTAATAGTGAG
AGCTTTCCAGAATGACGCGATCAATGCGGAGATTGTTAGCGTTACAGTCACCGAGGTTTGGATTGCTGTGTTGGCATATA
CCCTTAGTAGACATCTTGGTTGGGCACCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis