Browse Element(s) Details


OsAffx.7136.1.S1_at

Description tigr:9639.m01648
TID=OsAffx.7136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1791011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17890NANA11+10009986..10014981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17900OsAffx.5075.1.S1_x_at1/1111+10016771..10023680retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17910OsAffx.7136.1.S1_at11/1111+10029837..10030592expressed protein
LOC_Os11g17920NANA11+10035610..10036173hypothetical protein
LOC_Os11g17930Os.11263.1.A1_at11/1111+10046204..10047642expressed protein
LOC_Os11g17940OsAffx.31032.1.S1_at10/1111+10053756..10054910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7136.1.S1_at--526--3451Chr11:10029993..10030017 (25 bp)
CAGTCAAGTGGCGCCACGGTAGTTG
LOC_Os11g17910
OsAffx.7136.1.S1_at--710--8371Chr11:10030115..10030139 (25 bp)
GGCGAACTCGCAAAGGACACCGGTG
LOC_Os11g17910
OsAffx.7136.1.S1_at--438--5471Chr11:10030118..10030142 (25 bp)
GAACTCGCAAAGGACACCGGTGGAT
LOC_Os11g17910
OsAffx.7136.1.S1_at--514--2171Chr11:10030131..10030155 (25 bp)
ACACCGGTGGATCTAGCGAGCGAGA
LOC_Os11g17910
OsAffx.7136.1.S1_at--397--2551Chr11:10030217..10030241 (25 bp)
AACTCCATCACTCACCGGTGGCGGT
LOC_Os11g17910
OsAffx.7136.1.S1_at--368--7631Chr11:10030273..10030297 (25 bp)
GGGACAAAGCCAGCGGACTGAAGCA
LOC_Os11g17910
OsAffx.7136.1.S1_at--110--3291Chr11:10030277..10030301 (25 bp)
CAAAGCCAGCGGACTGAAGCAGAGG
LOC_Os11g17910
OsAffx.7136.1.S1_at--178--851Chr11:10030311..10030335 (25 bp)
ATGGCAGTGGGCAGGGACGGAGGCC
LOC_Os11g17910
OsAffx.7136.1.S1_at--461--5751Chr11:10030326..10030350 (25 bp)
GACGGAGGCCGCACAAACGATGCGC
LOC_Os11g17910
OsAffx.7136.1.S1_at--112--6231Chr11:10030330..10030354 (25 bp)
GAGGCCGCACAAACGATGCGCTCTG
LOC_Os11g17910
OsAffx.7136.1.S1_at--625--4451Chr11:10030498..10030522 (25 bp)
GCCTAAGCGAGTTCCACCTCCGCTA
LOC_Os11g17910
Target Sequence 
CAGTCAAGTGGCGCCACGGTAGTTGGGGGCGGGAACAACGAGAGGGAGCTTGGGGACGGGAATAGCACAGGGGAGATTGG
GGATGGGGATGGGGATGGTGCGGTGGAGATTGGGGTGAGGACGGCGAACTCGCAAAGGACACCGGTGGATCTAGCGAGCG
AGAGAGAAGGGGGGAGAGGGATCAAGAACATTGTGCCACCGTTGCAAGCTCCATCCTCCCCCTCAACTCCATCACTCACC
GGTGGCGGTGACAAAGAGGGGCCGAGGACGGCAACAGTCGGGGACAAAGCCAGCGGACTGAAGCAGAGGGGGGCGAGGAT
GGCAGTGGGCAGGGACGGAGGCCGCACAAACGATGCGCTCTGCCTCCACCTCCACTGTCGGTCGCCCGAGCTTGCCGCCC
GTGACCACCCGAGCTCGCTCCGCCGCTGTCACCGGCCTCCAGAGCTCGATCCACCTCCGCCTCCACTGCCAGCCACTCGA
GCTCACTCCGCCTCCGCCGCTACCCGCCTAAGCGAGTTCCACCTCCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis