Browse Element(s) Details


Os.11263.1.A1_at

Description gb:CB659104
DB_XREF= gi:29662829
DB_XREF=OSJNEc15M09.r
CLONE=OSJNEc15M09
TID=Os.11263.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.11263 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181862.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1793011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17900OsAffx.5075.1.S1_x_at1/1111+10016771..10023680retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g17910OsAffx.7136.1.S1_at11/1111+10029837..10030592expressed protein
LOC_Os11g17920NANA11+10035610..10036173hypothetical protein
LOC_Os11g17930Os.11263.1.A1_at11/1111+10046204..10047642expressed protein
LOC_Os11g17940OsAffx.31032.1.S1_at10/1111+10053756..10054910hypothetical protein
LOC_Os11g17954Os.54358.1.S1_at11/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.9060.1.S1_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed
LOC_Os11g17954OsAffx.27865.1.S1_x_at1/1111+10059734..10064080transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11263.1.A1_at--473--51Chr11:10047187..10047211 (25 bp)
ATTGTTCCAAACAGCATCAAGACGA
LOC_Os11g17930
Os.11263.1.A1_at--194--3091Chr11:10047218..10047242 (25 bp)
AATCAATCTCAATCCATCCATGGAG
LOC_Os11g17930
Os.11263.1.A1_at--801--3131Chr11:10047285..10047309 (25 bp)
AATTTTGATCACAAGCTGCCATATG
LOC_Os11g17930
Os.11263.1.A1_at--973--5311Chr11:10047370..10047394 (25 bp)
GAAGGTGAACCTGTATGAATTCATA
LOC_Os11g17930
Os.11263.1.A1_at--211--10231Chr11:10047393..10047417 (25 bp)
TATTGTTCAATCTTGTCGACGCGGA
LOC_Os11g17930
Os.11263.1.A1_at--159--10811Chr11:10047405..10047429 (25 bp)
TTGTCGACGCGGATTTGGAATTATT
LOC_Os11g17930
Os.11263.1.A1_at--564--3231Chr11:10047431..10047455 (25 bp)
CAAGATGGTTGTAATCAGCAAGCAA
LOC_Os11g17930
Os.11263.1.A1_at--301--9051Chr11:10047468..10047492 (25 bp)
TGCAGACTATGCCATTTGTGCGCGG
LOC_Os11g17930
Os.11263.1.A1_at--96--10111Chr11:10047475..10047499 (25 bp)
TATGCCATTTGTGCGCGGCCTTAAC
LOC_Os11g17930
Os.11263.1.A1_at--843--4571Chr11:10047487..10047511 (25 bp)
GCGCGGCCTTAACTCACATATGAAT
LOC_Os11g17930
Os.11263.1.A1_at--375--2071Chr11:10047502..10047526 (25 bp)
ACATATGAATCCTTGATTTAGCTTT
LOC_Os11g17930
Target Sequence 
ATTGTTCCAAACAGCATCAAGACGAAGCAAAAATCAATCTCAATCCATCCATGGAGGNATNTGCAAGCAAAACTCCAAGA
GAGAGACGNGTACATNTCAATTTTGATCACAAGCTGCCATATGCCTTNTGCCAAACTGCCCCGGAATCGNATCGGATNAT
NGCCGTNGTCGCTATCAGCAGNAGAAGGTGAACCTGTATGAATTCATATTGTTCAATCTTGTCGACGCGGATTTGGAATT
ATTNCAAGATGGTTGTAATCAGCAAGCAAAGCTNAGATGGATGCAGACTATGCCATTTGTGCGCGGCCTTAACTCACATA
TGAATCCTTGATTTAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11263.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis