Browse Element(s) Details


OsAffx.7362.1.S1_x_at

Description tigr:9639.m03647
TID=OsAffx.7362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g177202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g458202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g097602/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g490302/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g087802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g113502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g092802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g144202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g158101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g215101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g249101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g017701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g307201/11hypothetical protein
LOC_Os02g270501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g153201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g412501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g132301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g127801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g571601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g209701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g099001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g416501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g132401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g246901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g395981/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g296401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g241401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g113601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g158001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g217301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g335901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g145601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g036201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17690NANA8+10817965..10820065Zinc knuckle family protein
LOC_Os08g17700NANA8+10825619..10829256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17710NANA8+10831436..10833311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g17720Os.46314.3.S1_at4/118+10834450..10837797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17720OsAffx.7362.1.S1_x_at2/118+10834450..10837797transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17730OsAffx.24844.1.S1_at1/118+10839860..10840895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17730OsAffx.23366.2.S1_s_at1/118+10839860..10840895transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17740NANA8+10841095..10843459transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17750NANA8+10853366..10858779retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7362.1.S1_x_at--547--5171Chr11:23297055..23297079 (25 bp)
GCAAGGAGCCCTAAGCAGCATGCAG
NONE
OsAffx.7362.1.S1_x_at--300--8091Chr11:23297051..23297075 (25 bp)
GGAGCCCTAAGCAGCATGCAGCCGG
NONE
OsAffx.7362.1.S1_x_at--699--9791Chr11:23297044..23297068 (25 bp)
TAAGCAGCATGCAGCCGGCACCATT
NONE
OsAffx.7362.1.S1_x_at--126--4991Chr11:23297038..23297062 (25 bp)
GCATGCAGCCGGCACCATTTTTGTG
NONE
OsAffx.7362.1.S1_x_at--443--10411Chr11:23297020..23297044 (25 bp)
TTTTGTGAATGTTTATGGCTATGGA
NONE
OsAffx.7362.1.S1_x_at--114--751Chr11:23297012..23297036 (25 bp)
ATGTTTATGGCTATGGATGTGTGGT
NONE
OsAffx.7362.1.S1_x_at--781--3691Chr11:23297002..23297026 (25 bp)
CTATGGATGTGTGGTGAATGTTCGT
NONE
OsAffx.7362.1.S1_x_at--658--7351NONE
GTGAATGTTCGTTTGTATGAGATAT
NONE
OsAffx.7362.1.S1_x_at--679--84531Chr12:14350848..14350871 (24 bp)
TGGCCGAGGTTTTTGTCTCCATATC
NONE
OsAffx.7362.1.S1_x_at--52--8711Chr11:23296354..23296378 (25 bp)
TGTCTCCATATCGAGACATCTACTC
NONE
OsAffx.7362.1.S1_x_at--268--13924Chr10:10288559..10288582 (24 bp)
AGACCGTGAAGCCTTACATGCGCAC
NONE
Target Sequence 
GCAAGGAGCCCTAAGCAGCATGCAGCCGGCACCATTTTTGTGAATGTTTATGGCTATGGATGTGTGGTGAATGTTCGTTT
GTATGAGATATGGAAAGTCGGGAATGGATGTATCATTGGCCGAGGTTTTTGTCTCCATATCGAGACATCTACTCAGAAGA
CCGTGAAGCCTTACATGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7362.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis