Browse Element(s) Details


OsAffx.7596.1.S1_at

Description tigr:9640.m01424
TID=OsAffx.7596.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1467011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14640Os.46306.1.S1_x_at3/1112+8364611..8370112transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14650Os.14491.2.S1_x_at1/1112+8372760..8376409transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14650Os.47463.1.S1_x_at1/1112+8372760..8376409transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g14660NANA12+8382722..8384434hypothetical protein
LOC_Os12g14670OsAffx.7596.1.S1_at11/1112+8394228..8394895hypothetical protein
LOC_Os12g14680OsAffx.303.1.S1_at1/1112+8402962..8404173retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14699Os.54113.1.S1_at9/1112+8405319..8415057Protein kinase domain containing protein, expressed
LOC_Os12g14699Os.52367.1.S1_at1/1112+8405319..8415057Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7596.1.S1_at--426--9991Chr12:8394831..8394855 (25 bp)
TAGCGCTCAAAATCAGGCAGGCCGT
LOC_Os12g14670
OsAffx.7596.1.S1_at--860--4491Chr12:8394811..8394835 (25 bp)
GCCGTGGAGACGGTTCGCCAGAACA
LOC_Os12g14670
OsAffx.7596.1.S1_at--1--3251Chr12:8394788..8394812 (25 bp)
CAAGCAGGAGTGTGTCCAGATCAGA
LOC_Os12g14670
OsAffx.7596.1.S1_at--1140--7811Chr12:8394755..8394779 (25 bp)
GGTCAGGGTGAGCAGCATACTCTCC
LOC_Os12g14670
OsAffx.7596.1.S1_at--152--9511Chr12:8394735..8394759 (25 bp)
TCTCCCAGCTCGAGGACACGGTGAT
LOC_Os12g14670
OsAffx.7596.1.S1_at--769--5631Chr12:8394721..8394745 (25 bp)
GACACGGTGATCATCAGGAGCAACC
LOC_Os12g14670
OsAffx.7596.1.S1_at--888--4811Chr12:8394586..8394610 (25 bp)
GCTCTTTCCAAGAAGTTGCGCCGGG
LOC_Os12g14670
OsAffx.7596.1.S1_at--56--4571Chr12:8394569..8394593 (25 bp)
GCGCCGGGTGCAAGATGACATCTCG
LOC_Os12g14670
OsAffx.7596.1.S1_at--165--5271Chr12:8394528..8394552 (25 bp)
GAATGCTTGCAACGAGTGTTCATGT
LOC_Os12g14670
OsAffx.7596.1.S1_at--250--7431Chr12:8394513..8394537 (25 bp)
GTGTTCATGTTACTATTGTTCTTGC
LOC_Os12g14670
OsAffx.7596.1.S1_at--965--10691Chr12:8394492..8394516 (25 bp)
TTGCGCGAATCCAAGACGACGTTGA
LOC_Os12g14670
Target Sequence 
TAGCGCTCAAAATCAGGCAGGCCGTGGAGACGGTTCGCCAGAACAAGCAGGAGTGTGTCCAGATCAGAAGGCGAGTGGTC
AGGGTGAGCAGCATACTCTCCCAGCTCGAGGACACGGTGATCATCAGGAGCAACCCCGCCATGGCAGCTGCTCTGGAGGA
GCTCGACTCGACGCTCCGCCACGCCCACACGCTCATCGCGGCGTGCCAGGAGAGGAACATCGTGTGCCTCTTCTGCGCGG
CCACTGCTCTTTCCAAGAAGTTGCGCCGGGTGCAAGATGACATCTCGGATCAGATGATGGAGGGAATGCTTGCAACGAGT
GTTCATGTTACTATTGTTCTTGCGCGAATCCAAGACGACGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis