Browse Element(s) Details


OsAffx.7644.1.S1_at

Description tigr:9640.m01986
TID=OsAffx.7644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2007011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20020NANA12+11644467..11646401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20030NANA12+11646794..11648290hypothetical protein
LOC_Os12g20040Os.47004.1.S1_at2/1112+11650125..11655086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20040OsAffx.13882.2.S1_at2/1112+11650125..11655086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20040OsAffx.24330.2.S1_at1/1112+11650125..11655086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20050Os.45173.1.S1_x_at2/1112+11656841..11660055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20060OsAffx.8469.1.A1_x_at1/1112+11660345..11666316retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20070OsAffx.7644.1.S1_at11/1112+11670435..11671562hypothetical protein
LOC_Os12g20080NANA12+11671794..11672486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g20090NANA12+11676363..11676878hypothetical protein
LOC_Os12g20100OsAffx.7645.1.S1_at11/1112+11683944..11684414hypothetical protein
LOC_Os12g20110NANA12+11687039..11693043retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7644.1.S1_at--708--9231Chr12:11670999..11671023 (25 bp)
TCCATACTCCATATTTGTGTCGCTG
LOC_Os12g20070
OsAffx.7644.1.S1_at--813--7231Chr12:11671017..11671041 (25 bp)
GTCGCTGGAGCATCATTTTGTCTTC
LOC_Os12g20070
OsAffx.7644.1.S1_at--142--9571Chr12:11671037..11671061 (25 bp)
TCTTCATCAAGTACCCGGACTAGAT
LOC_Os12g20070
OsAffx.7644.1.S1_at--231--8031Chr12:11671152..11671176 (25 bp)
GGAGTTTTACAAGGCCTTCCACCAT
LOC_Os12g20070
OsAffx.7644.1.S1_at--587--3271Chr12:11671228..11671252 (25 bp)
CAACACCCTCAGCTATGGACATAAG
LOC_Os12g20070
OsAffx.7644.1.S1_at--898--6131Chr12:11671282..11671306 (25 bp)
GAGGGACCCGAATGTTTCATATTAA
LOC_Os12g20070
OsAffx.7644.1.S1_at--1079--8991Chr12:11671312..11671336 (25 bp)
TGAATGTTCCTCCTGTTTGGGTTGA
LOC_Os12g20070
OsAffx.7644.1.S1_at--228--251Chr12:11671387..11671411 (25 bp)
ATATCACTGTTCATCCTAAGACTTG
LOC_Os12g20070
OsAffx.7644.1.S1_at--178--5851Chr12:11671416..11671440 (25 bp)
GACCATGACGATGGGATTCCCTACT
LOC_Os12g20070
OsAffx.7644.1.S1_at--1086--10491Chr12:11671493..11671517 (25 bp)
TTCACAGTTTGCACCTACGTCTTTA
LOC_Os12g20070
OsAffx.7644.1.S1_at--783--9911Chr12:11671508..11671532 (25 bp)
TACGTCTTTATTTCCTAATCCTGCA
LOC_Os12g20070
Target Sequence 
TCCATACTCCATATTTGTGTCGCTGGAGCATCATTTTGTCTTCATCAAGTACCCGGACTAGATAGCGATGACGATGATGA
GGATGATGGTGGACATTTATCACCAGTACATGGGGATGAGCCACAGGGGCCCAATCCTCAAGATATGGGTGAAGGAGTTT
TACAAGGCCTTCCACCATCACCATCACCGTTGTATCCTATCCACTCTGATGATGAAGCTGAAGCCGAAGCAACACCCTCA
GCTATGGACATAAGTGAAGCTAGCCAAGAACCAGAAACAACAAGAGGGACCCGAATGTTTCATATTAATGATTTGAATGT
TCCTCCTGTTTGGGTTGAGACTCAAGAAGAAGAAGATCCTGAAGAACGGATTTTTGAAACACAGGAACATATCACTGTTC
ATCCTAAGACTTGTGAAGACCATGACGATGGGATTCCCTACTCATGCCCTACCACCAATACAATGGATATAGCTACAACA
TATAATGCTGGTTTTTCACAGTTTGCACCTACGTCTTTATTTCCTAATCCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis