Browse Element(s) Details


OsAffx.787.1.S1_at

Description gb:NM_192767.1
DB_XREF= gi:34912617
GEN=P0410E01.13
TID=OsAffx.787.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0410E01.13 (P0410E01.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g427502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42730Os.41283.1.S1_at8/111+24639449..24644008GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g42740Os.20364.1.S1_at1/111+24652185..24652514Ammonium transporter 2, putative
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.787.1.S1_at--670--691Chr01:24659290..24659314 (25 bp)
ATGAGCATCGCCACAAGCTTGGAGT
NONE
OsAffx.787.1.S1_at--835--3231Chr01:24659277..24659301 (25 bp)
CAAGCTTGGAGTCGCTAGATCCGGC
NONE
OsAffx.787.1.S1_at--995--2211Chr01:24659248..24659272 (25 bp)
ACAAGCTCAAGGGTGGCTACATCCA
NONE
OsAffx.787.1.S1_at--840--2591Chr01:24658696..24658720 (25 bp)
AACGCCGCCTTCATGGTTTTGGTTG
NONE
OsAffx.787.1.S1_at--606--731Chr01:24658656..24658680 (25 bp)
ATGTAAGGTTTCCACCAGCACCAAA
NONE
OsAffx.787.1.S1_at--310--6191Chr01:24658497..24658521 (25 bp)
GAGGACTTATATGCTGCCAAACTAT
NONE
OsAffx.787.1.S1_at--782--4911Chr01:24656661..24656685 (25 bp)
GCTTGTTGAAAGTGCCTGCTTTGTA
LOC_Os01g42750
OsAffx.787.1.S1_at--556--7611Chr01:24656616..24656639 (24 bp)
GGGAATGTCCTGTCCAATTTTAAGA
LOC_Os01g42750
OsAffx.787.1.S1_at--266--5731Chr01:24655160..24655184 (25 bp)
GACTGCAGCAAGGTACGTATCCATG
NONE
OsAffx.787.1.S1_at--347--6911Chr01:24655144..24655168 (25 bp)
GTATCCATGCATGCGTGCCTGATGG
NONE
OsAffx.787.1.S1_at--151--8871Chr01:24655125..24655149 (25 bp)
TGATGGCCCGCCAGATATGACAACG
NONE
Target Sequence 
ATGAGCATCGCCACAAGCTTGGAGTCGCTAGATCCGGCCGCCACAAGCTCAAGGGTGGCTACATCCACCGTCACACTGAT
GAGGCCGTCATCAACGCCGCCTTCATGGTTTTGGTTGAGGAATCTGGCACCTATGTAAGGTTTCCACCAGCACCAAACAA
AGAGGACTTATATGCTGCCAAACTATATGTCGGGAAAGCTTTGGCGATAGATGAAGTCTGTCAGGAAAAGAAGCTTGTTG
AAAGTGCCTGCTTTGTAAAAACAATGCAGAAGGAAGCGGGGAATGTCCTGTCCAATTTTAAGAGAAAGCTATCCGGAACT
TCTGTGGTTCTTCCTATGAAGTTCCGGGCAATTAAAGACTGCAGCAAGGTACGTATCCATGCATGCGTGCCTGATGGCCC
GCCAGATATGACAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis