Browse Element(s) Details


OsAffx.7880.1.S1_at

Description tigr:9640.m04285
TID=OsAffx.7880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4353011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein
LOC_Os12g43540OsAffx.20105.1.S1_at11/1112+26981668..26982581hypothetical protein
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7880.1.S1_at--471--2771Chr12:26974490..26974755 (25 bp)
AAGACGCATCAGAGACATGGACGAT
LOC_Os12g43530
OsAffx.7880.1.S1_at--822--3491Chr12:26974475..26974499 (25 bp)
CATGGACGATTTGCCGGATCTTCAA
LOC_Os12g43530
OsAffx.7880.1.S1_at--261--6431Chr12:26974459..26974483 (25 bp)
GATCTTCAAGAGGAGCATGACCTAC
LOC_Os12g43530
OsAffx.7880.1.S1_at--923--5051Chr12:26974413..26974437 (25 bp)
GCAGCAGCATCCATGAACAAGCGAA
LOC_Os12g43530
OsAffx.7880.1.S1_at--121--1651Chr12:26974394..26974418 (25 bp)
AGCGAATTAGCCATGAGCTTCAGCA
LOC_Os12g43530
OsAffx.7880.1.S1_at--174--8911Chr12:26974381..26974405 (25 bp)
TGAGCTTCAGCACATTCATCATCAT
LOC_Os12g43530
OsAffx.7880.1.S1_at--83--1531Chr12:26974352..26974376 (25 bp)
AGCAGCAATTCTACTACCACGAGGT
LOC_Os12g43530
OsAffx.7880.1.S1_at--59--3351Chr12:26974335..26974359 (25 bp)
CACGAGGTAGTCCATGACGGCCATG
LOC_Os12g43530
OsAffx.7880.1.S1_at--428--9411Chr12:26974169..26974193 (25 bp)
TCGTCGCTGACATTCGTCATCGTCA
LOC_Os12g43530
OsAffx.7880.1.S1_at--141--7131Chr12:26974154..26974178 (25 bp)
GTCATCGTCAGTCGCCGTTCATGCT
LOC_Os12g43530
OsAffx.7880.1.S1_at--360--9371Chr12:26974130..26974154 (25 bp)
TCGACTTCCATGCTGGGACGGCGTC
LOC_Os12g43530
Target Sequence 
AAGACGCATCAGAGACATGGACGATTTGCCGGATCTTCAAGAGGAGCATGACCTACACCAAGGGCAGGGCGGCGGCGGCA
GCAGCATCCATGAACAAGCGAATTAGCCATGAGCTTCAGCACATTCATCATCATCAGCAGCAGCAATTCTACTACCACGA
GGTAGTCCATGACGGCCATGGCCACCACCATCGTCGCCACCTGCAGCACTACGCCGGCAGCGCTTCCATGGCAGCGGCGG
CGGCCAACATCGTCGACGTCATCGATCACTCGTCGGACGCCGAGACGACGACGAGGTCTCACTCTCACTCTCAGTCTCAC
CTCGTCGCTGACATTCGTCATCGTCAGTCGCCGTTCATGCTCGACTTCCATGCTGGGACGGCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis