Browse Element(s) Details


OsAffx.8762.1.S1_at

Description gb:XM_354025.1
DB_XREF= gi:35189483
GEN=P0427D10.37
TID=OsAffx.8762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g010061/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g00998NANA5+2342..3402retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01002NANA5+3623..4090hypothetical protein
LOC_Os05g01006OsAffx.8762.1.S1_at1/115+4598..8876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g01010OsAffx.26673.1.S1_at11/115+12587..14164hypothetical protein
LOC_Os05g01020Os.47430.1.S1_x_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed
LOC_Os05g01020Os.16909.1.S1_s_at11/115+16675..25049Paired amphipathic helix repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8762.1.S1_at--956--8711Chr07:27192707..27192731 (25 bp)
TGTCGACGAAAAATCCACGCGCCAG
NONE
OsAffx.8762.1.S1_at--296--1852Chr12:5109410..5109644 (25 bp)
ACGAAAAATCCACGCGCCAGCCGAT
NONE
OsAffx.8762.1.S1_at--147--4511Chr07:27192683..27192707 (25 bp)
GCCGATGGTGCCAGGCTTGTATTGA
NONE
OsAffx.8762.1.S1_at--539--7791Chr07:27192677..27192701 (25 bp)
GGTGCCAGGCTTGTATTGACGCGAA
NONE
OsAffx.8762.1.S1_at--699--6871Chr07:27192665..27192689 (25 bp)
GTATTGACGCGAAGTATGTTGACAA
NONE
OsAffx.8762.1.S1_at--129--711Chr07:27192650..27192674 (25 bp)
ATGTTGACAAACACACTGGCTTAGG
NONE
OsAffx.8762.1.S1_at--173--3311Chr07:27192639..27192663 (25 bp)
CACACTGGCTTAGGAGTTCTGCTTA
NONE
OsAffx.8762.1.S1_at--870--4895Chr08:20809376..20809395 (20 bp)
GCTTAGGAGTTCTGCTTAGCTCCAG
NONE
OsAffx.8762.1.S1_at--187--4798Chr12:18546270..18546312 (24 bp)
GCTCCAGTGCAGATCCGCGTGCCAA
NONE
OsAffx.8762.1.S1_at--260--1292Chr07:27192604..27192628 (25 bp)
AGATCCGCGTGCCAATCAGTTTGAT
NONE
OsAffx.8762.1.S1_at--571--9191Chr07:27192595..27192619 (25 bp)
TGCCAATCAGTTTGATCTTGGAACT
NONE
Target Sequence 
TGTCGACGAAAAATCCACGCGCCAGCCGATGGTGCCAGGCTTGTATTGACGCGAAGTATGTTGACAAACACACTGGCTTA
GGAGTTCTGCTTAGCTCCAGTGCAGATCCGCGTGCCAATCAGTTTGATCTTGGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis