Browse Element(s) Details


OsAffx.8940.1.S1_at

Description tigr:9629.m03154
TID=OsAffx.8940.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3365011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33609OsAffx.24844.1.S1_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.23366.2.S1_s_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.47463.1.S1_x_at6/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.14491.2.S1_x_at4/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33640NANA1+18839680..18842985transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g33650OsAffx.8940.1.S1_at11/111+18847426..18848898hypothetical protein
LOC_Os01g33659NANA1+18853546..18854854NA
LOC_Os01g33670OsAffx.21178.1.S1_x_at11/111+18857174..18858169expressed protein
LOC_Os01g33684Os.32933.1.S1_at11/111+18858748..18867654NB-ARC domain containing protein, expressed
LOC_Os01g33684Os.32933.2.S1_x_at11/111+18858748..18867654NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8940.1.S1_at--558--1831Chr01:18848321..18848345 (25 bp)
ACGCGCGCACGATGCTGTTCAAGGT
LOC_Os01g33650
OsAffx.8940.1.S1_at--954--5971Chr01:18848356..18848380 (25 bp)
GAGAAATTCTGCTCGCACGGAGGAT
LOC_Os01g33650
OsAffx.8940.1.S1_at--763--4751Chr01:18848435..18848459 (25 bp)
GCTCTAGGGCTTTCGAGGTTTCGGA
LOC_Os01g33650
OsAffx.8940.1.S1_at--636--7931Chr01:18848467..18848491 (25 bp)
GGATTCGAAGGTGGCAGCATCTACT
LOC_Os01g33650
OsAffx.8940.1.S1_at--1--2531Chr01:18848506..18848530 (25 bp)
AACTTCCATCTGTCACTGGTGATCA
LOC_Os01g33650
OsAffx.8940.1.S1_at--283--5771Chr01:18848557..18848581 (25 bp)
GACGTCGGCATGTACGCGATCTCAC
LOC_Os01g33650
OsAffx.8940.1.S1_at--139--1551Chr01:18848651..18848675 (25 bp)
AGCATCACCTGCTGCGCATTATGGA
LOC_Os01g33650
OsAffx.8940.1.S1_at--1070--6391Chr01:18848685..18848709 (25 bp)
GATCGGCCGCATATATCGCTATGTT
LOC_Os01g33650
OsAffx.8940.1.S1_at--746--8771Chr01:18848706..18848730 (25 bp)
TGTTTCTACTGCTCTTGAAGGGTCC
LOC_Os01g33650
OsAffx.8940.1.S1_at--941--8971Chr01:18848721..18848745 (25 bp)
TGAAGGGTCCGGTCTTATGCCACCA
LOC_Os01g33650
OsAffx.8940.1.S1_at--394--131Chr01:18848748..18848772 (25 bp)
ATCTGGTTCGGACACGGCTAGTACT
LOC_Os01g33650
Target Sequence 
ACGCGCGCACGATGCTGTTCAAGGTGTTCCAAATGGAGAAATTCTGCTCGCACGGAGGATTCTGGGAAGAGATCGAGGAC
CTGGACGGCAGGGTGCTCTTCCTTGCCCGATGCTGCTCTAGGGCTTTCGAGGTTTCGGAGATCCATGGATTCGAAGGTGG
CAGCATCTACTTCCTGGATGACATCAACTTCCATCTGTCACTGGTGATCAAGGACAAGGCCGACTACCCCTGCGCCGACG
TCGGCATGTACGCGATCTCACCAACCGATGGCGTTGCTCGCCCTGGTATGCAGCTCGCAGCCGGTATGCGCCCTTCAATC
TACAGCACCAAGCATCACCTGCTGCGCATTATGGATTGCAAGGGGATCGGCCGCATATATCGCTATGTTTCTACTGCTCT
TGAAGGGTCCGGTCTTATGCCACCACCATCTGGTTCGGACACGGCTAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis