Browse Element(s) Details


OsAffx.9066.1.S1_x_at

Description gb:NM_193129.1
DB_XREF= gi:34913341
GEN=P0455H11.22
TID=OsAffx.9066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM (P0455H11.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g183601/11Protein kinase domain containing protein, expressed
LOC_Os12g423191/11
LOC_Os04g297401/11Protein kinase domain containing protein
LOC_Os09g096191/11
LOC_Os07g138401/11hypothetical protein
LOC_Os12g395501/11hypothetical protein
LOC_Os09g249241/11Sugar carrier protein A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed
LOC_Os09g18330OsAffx.29913.1.S1_at11/119+11246739..11247256hypothetical protein
LOC_Os09g18340NANA9+11249798..11252334transposon protein, putative, unclassified
LOC_Os09g18350NANA9+11253661..11254530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18360Os.19031.1.A1_at11/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18360OsAffx.9066.1.S1_x_at1/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18370Os.47463.1.S1_x_at6/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18370Os.14491.2.S1_x_at5/119+11273886..11277583transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18380NANA9+11280227..11283533transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18390OsAffx.17771.1.S1_at4/119+11287811..11289840Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os09g18400OsAffx.29914.1.S1_at10/119+11291525..11292537hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005351molecular_functionsugar porter activity
GO:0005524molecular_functionATP binding
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9066.1.S1_x_at--669--10253Chr07:26360361..26360385 (25 bp)
TTTGTGTGCCGGGCCTAGCCAGCCG
NONE
OsAffx.9066.1.S1_x_at--804--7652Chr11:26030883..26031119 (25 bp)
GGGAGGCCCAGGCACGGCTCGGTCG
NONE
OsAffx.9066.1.S1_x_at--1114--7231Chr07:26360460..26360484 (25 bp)
GTCGCCGAGCCATGCTTGGGCCGGG
NONE
OsAffx.9066.1.S1_x_at--1084--75568Chr12:24356801..24356885 (25 bp)
GGGCCTTATGGCCATCTATACTTGC
LOC_Os12g39550
OsAffx.9066.1.S1_x_at--1055--8431Chr07:26360531..26360555 (25 bp)
GGCCATCTATACTTGCTAATGTCCT
NONE
OsAffx.9066.1.S1_x_at--325--431Chr07:26360535..26360559 (25 bp)
ATCTATACTTGCTAATGTCCTCCCC
NONE
OsAffx.9066.1.S1_x_at--2--10151Chr07:26360538..26360562 (25 bp)
TATACTTGCTAATGTCCTCCCCGAG
NONE
OsAffx.9066.1.S1_x_at--351--9891Chr07:26360540..26360564 (25 bp)
TACTTGCTAATGTCCTCCCCGAGCT
NONE
OsAffx.9066.1.S1_x_at--1158--9371Chr07:26360564..26360588 (25 bp)
TCGATGAGGAGAGCCGTTGCAACTA
NONE
OsAffx.9066.1.S1_x_at--372--1671Chr07:26360575..26360599 (25 bp)
AGCCGTTGCAACTATGGTGGATCTT
NONE
OsAffx.9066.1.S1_x_at--56--4051Chr07:26360578..26360602 (25 bp)
CGTTGCAACTATGGTGGATCTTGGG
NONE
Target Sequence 
TTTGTGTGCCGGGCCTAGCCAGCCGGCCCATCGTGCCGGGCCGGCCCGACCGTGCCGGGCCAGCCCAGCGTGCCAGTGGG
GAGGCCCAGGCACGGCTCGGTCGCCGAGCCATGCTTGGGCCGGGCCAAAAAGTAGTGCCGTGGGCCGGGCCTTCGGGCCT
CGGGCCTTATGGCCATCTATACTTGCTAATGTCCTCCCCGAGCTCGATGAGGAGAGCCGTTGCAACTATGGTGGATCTTG
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9066.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis