Browse Element(s) Details


OsAffx.9243.1.S1_at

Description gb:NM_192286.1
DB_XREF= gi:34911655
GEN=P0510C12.18
TID=OsAffx.9243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0510C12.18 (P0510C12.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g174191/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17390Os.52645.1.S1_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17390Os.52645.1.S2_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17400OsAffx.27685.1.S1_at11/116+10095791..10096168hypothetical protein
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9243.1.S1_at--1015--7791Chr01:26176470..26176494 (25 bp)
GGTCTACAGGGCACGACCCGCTGGC
NONE
OsAffx.9243.1.S1_at--634--4131Chr01:26176495..26176519 (25 bp)
CGCTGCCGTGGTGAGCTGCCACGTT
NONE
OsAffx.9243.1.S1_at--508--1591Chr01:26176508..26176532 (25 bp)
AGCTGCCACGTTGTTGTTCGATGAT
NONE
OsAffx.9243.1.S1_at--232--4411Chr01:26176512..26176536 (25 bp)
GCCACGTTGTTGTTCGATGATTCAA
NONE
OsAffx.9243.1.S1_at--28--6571Chr01:26176530..26176554 (25 bp)
GATTCAACGATGTGGTCGTATCACA
NONE
OsAffx.9243.1.S1_at--766--7791NONE
GGTCGTATCACATCCAAGTTTTTGG
NONE
OsAffx.9243.1.S1_at--239--5191Chr01:26179797..26179821 (25 bp)
GCAAGGCTCGACTACTCACTATTTA
NONE
OsAffx.9243.1.S1_at--156--4811Chr01:26179802..26179826 (25 bp)
GCTCGACTACTCACTATTTATCAAC
NONE
OsAffx.9243.1.S1_at--381--9691Chr01:26179812..26179836 (25 bp)
TCACTATTTATCAACGTCTACTTCG
NONE
OsAffx.9243.1.S1_at--847--2734Chr07:14761553..14761579 (24 bp)
AAGAAGGATTCCGTCAACACCAACG
NONE
OsAffx.9243.1.S1_at--873--5011Chr01:26179921..26179945 (25 bp)
GCAGGGGACCATTCTTGTGGTATAA
NONE
Target Sequence 
GGTCTACAGGGCACGACCCGCTGGCCGCTGCCGTGGTGAGCTGCCACGTTGTTGTTCGATGATTCAACGATGTGGTCGTA
TCACATCCAAGTTTTTGGGGAGCGCAAGGCTCGACTACTCACTATTTATCAACGTCTACTTCGTCTTCACCAACATGTCA
AACACTGGAGACAAGGAGAAGAAGGATTCCGTCAACACCAACGGAGGCAATACTACCTCAAACTCCAGCAGGGGACCATT
CTTGTGGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis