Browse Element(s) Details


OsAffx.9457.1.S1_at

Description tigr:9629.m05927
TID=OsAffx.9457.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6033011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60290Os.51620.1.S1_at11/111+35212197..35215541expressed protein
LOC_Os01g60310NANA1+35217538..35218707hypothetical protein
LOC_Os01g60330OsAffx.9457.1.S1_at11/111+35226005..35228563Protein kinase domain containing protein, expressed
LOC_Os01g60340Os.31128.1.S1_x_at1/111+35229152..35233804C2 domain containing protein
LOC_Os01g60350Os.31128.1.S1_x_at11/111+35237472..35240602expressed protein
LOC_Os01g60360NANA1+35244531..35246258Ubiquitin-conjugating enzyme E2-17 kDa, putative
LOC_Os01g60369Os.45173.1.S1_x_at3/111+35248279..35251510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60380NANA1+35251776..35256194retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9457.1.S1_at--769--2811Chr01:35227688..35227712 (25 bp)
AAGATATCTCTTGGTGTGGCTCGTG
LOC_Os01g60330
OsAffx.9457.1.S1_at--186--8491Chr01:35227704..35227728 (25 bp)
TGGCTCGTGGAATTGCTCATCTTCA
LOC_Os01g60330
OsAffx.9457.1.S1_at--177--8371Chr01:35227739..35227763 (25 bp)
GGCGGGAAGTTCATCCATGGCAACC
LOC_Os01g60330
OsAffx.9457.1.S1_at--774--7451Chr01:35227806..35227830 (25 bp)
GTGTCTCTGAGTTTGGGCTGGCACA
LOC_Os01g60330
OsAffx.9457.1.S1_at--994--7571Chr01:35227820..35227844 (25 bp)
GGGCTGGCACAGCTTATGACCATTC
LOC_Os01g60330
OsAffx.9457.1.S1_at--955--4431Chr01:35227860..35227884 (25 bp)
GCCTTGTCGGATATCGTGCACCAGA
LOC_Os01g60330
OsAffx.9457.1.S1_at--890--9431Chr01:35227932..35227956 (25 bp)
TCGGTGTGTTGGTCCTCGAAATGCT
LOC_Os01g60330
OsAffx.9457.1.S1_at--430--2431Chr01:35227963..35227987 (25 bp)
AAAAGCGCCTCTGAGATCTCCTGGA
LOC_Os01g60330
OsAffx.9457.1.S1_at--273--1331Chr01:35227990..35228014 (25 bp)
AGAGGACTCCATTGAGCACTTGCCA
LOC_Os01g60330
OsAffx.9457.1.S1_at--593--5751Chr01:35228063..35228087 (25 bp)
GACGTCGACTTGTTAAGGCATCCCA
LOC_Os01g60330
OsAffx.9457.1.S1_at--957--6391Chr01:35228185..35228209 (25 bp)
GATCGTTGAGATCCGGAATTCCTAC
LOC_Os01g60330
Target Sequence 
AAGATATCTCTTGGTGTGGCTCGTGGAATTGCTCATCTTCATGCTGAGGGAGGCGGGAAGTTCATCCATGGCAACCTCAA
GTCATCAAACATCCTTCTGTCACAGAACCTCGACGGCTGTGTCTCTGAGTTTGGGCTGGCACAGCTTATGACCATTCCAC
CAGCTCCAGCACGCCTTGTCGGATATCGTGCACCAGAAGTCCTCGAGACTAAAAAGCCAACCCAGAAGTCTGATGTCTAC
AGCTTCGGTGTGTTGGTCCTCGAAATGCTGACAGGAAAAGCGCCTCTGAGATCTCCTGGACGAGAGGACTCCATTGAGCA
CTTGCCAAGGTGGGTGCAGTCTGTGGTCCGGGAAGAATGGACCGCGGAGGTTTTTGACGTCGACTTGTTAAGGCATCCCA
ACATTGAGGATGAGATGGTTCAGATGCTCCAGGTTGCAATGGCATGTGTTGCCGCCCCCCCTGATCAACGGCCAAAAATG
GACGAGGTGATCAGGAGGATCGTTGAGATCCGGAATTCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis