Browse Element(s) Details


Os.10010.1.S1_at

Description gb:AK065976.1
DB_XREF= gi:32975994
TID=Os.10010.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047L05, full insert sequence.
FL= gb:AK065976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3769011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37670OsAffx.31350.1.S1_at11/1111+21740077..21743107expressed protein
LOC_Os11g37680OsAffx.19221.1.S1_at11/1111+21760128..21764827hypothetical protein
LOC_Os11g37690Os.10010.1.S1_at11/1111+21766158..21770126RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g37700Os.5349.1.S1_at10/1111+21771553..21780972ABC transporter, putative, expressed
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10010.1.S1_at--667--5231Chr11:21766978..21767002 (25 bp)
GAATATGATCCTGACATCTTCTCCA
LOC_Os11g37690
Os.10010.1.S1_at--352--10771Chr11:21766941..21766965 (25 bp)
TTGATGCTGCAACTGGTGTAACTCC
LOC_Os11g37690
Os.10010.1.S1_at--1079--1111Chr11:21766840..21766864 (25 bp)
AGTGACAACGATGGTCCTGTTCCGA
LOC_Os11g37690
Os.10010.1.S1_at--159--7251Chr11:21766827..21766851 (25 bp)
GTCCTGTTCCGATTTCTGTTTTCCT
LOC_Os11g37690
Os.10010.1.S1_at--139--10391Chr11:21766809..21766833 (25 bp)
TTTTCCTGGTTGCTAGTGTTCTGAA
LOC_Os11g37690
Os.10010.1.S1_at--1027--5491Chr11:21766781..21766805 (25 bp)
GAACAGTGCGAAGCTCCTGCAGGAA
LOC_Os11g37690
Os.10010.1.S1_at--755--4091Chr11:21766553..21766577 (25 bp)
CGAAAAAGGCTTGCGCTGTTGCATT
LOC_Os11g37690
Os.10010.1.S1_at--1075--4611Chr11:21766357..21766381 (25 bp)
GCTCCGGGTTACTCCTGGTTTTGAT
LOC_Os11g37690
Os.10010.1.S1_at--617--10371Chr11:21766339..21766363 (25 bp)
TTTTGATCGTGGCTCTGTTTTACTC
LOC_Os11g37690
Os.10010.1.S1_at--658--9271Chr11:21766316..21766340 (25 bp)
TCCTGCTTTTCTCCTAATTTGTGAG
LOC_Os11g37690
Os.10010.1.S1_at--450--311Chr11:21766237..21766261 (25 bp)
ATAGCCACCATATAACACACGGAGA
LOC_Os11g37690
Target Sequence 
GAATATGATCCTGACATCTTCTCCACATATGAACATATTGATGCTGCAACTGGTGTAACTCCAGGACATAGGCAAAAAGT
AAAATCAATNCGCCAATTTGGCAAGTACGAGAGAGACAATATGAAGAATGGGGCTACTAGTGACAACGATGGTCCTGTTC
CGATTTCTGTTTTCCTGGTTGCTAGTGTTCTGAAGGAGAACAGTGCGAAGCTCCTGCAGGAAGCTCGAGGGATTGATGAT
GTTATTAGGATTTTGAATGATGTTAATGGGAATTTGGATGCGAAAAAGGCTTGCGCTGTTGCATTGNAAACTTCACAGGA
AATACCNTTANAAAAGATCCAGGGAAAGAAGCCATAACAACGAGCTCCGGGTTACTCCTGGTTTTGATCGTGGCTCTGTT
TTACTCCTGCTTTTCTCCTAATTTGTGAGAAAAATGTACAAAGTTCGTTAATTTGTGGCTGGTAAGAATTCTACCACTAA
ACTATAGCCACCATATAACACACGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis