Browse Element(s) Details


Os.5349.1.S1_at

Description gb:AK121517.1
DB_XREF= gi:37991140
TID=Os.5349.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027B16, full insert sequence.
FL= gb:AK121517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3770010/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37680OsAffx.19221.1.S1_at11/1111+21760128..21764827hypothetical protein
LOC_Os11g37690Os.10010.1.S1_at11/1111+21766158..21770126RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g37700Os.5349.1.S1_at10/1111+21771553..21780972ABC transporter, putative, expressed
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37720OsAffx.31351.1.S1_at10/1111+21800587..21802336Integral membrane protein DUF6 containing protein, expressed
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5349.1.S1_at--1115--10211Chr11:21772093..21772212 (25 bp)
TTAGGCCGTTGATACCGATTTGGTG
LOC_Os11g37700
Os.5349.1.S1_at--133--2371Chr11:21772050..21772074 (25 bp)
AAACCCCGTGTCATGGACCATCTAT
LOC_Os11g37700
Os.5349.1.S1_at--684--4331Chr11:21772033..21772057 (25 bp)
CCATCTATGGTGTTGTGGCGTCACA
LOC_Os11g37700
Os.5349.1.S1_at--881--2891Chr11:21771998..21772022 (25 bp)
AATGGTGATGTTCTTTCGGTTCCCG
LOC_Os11g37700
Os.5349.1.S1_at--955--5571Chr11:21771938..21771962 (25 bp)
GACAACCTAGGGATGCGGCATAGTT
LOC_Os11g37700
Os.5349.1.S1_at--1040--6831Chr11:21771916..21771940 (25 bp)
GTTTCCTAGGATATGTTGTGCTCAC
LOC_Os11g37700
Os.5349.1.S1_at--1161--7311Chr11:21771899..21771923 (25 bp)
GTGCTCACACATTTTGGCTACATCA
LOC_Os11g37700
Os.5349.1.S1_at--158--8311Chr11:21771854..21771878 (25 bp)
GGCTATGCCATCAAGTACTTCAACT
LOC_Os11g37700
Os.5349.1.S1_at--1141--1331Chr11:21771796..21771820 (25 bp)
AGAGTGACATTATTTTTGGCCGCCA
LOC_Os11g37700
Os.5349.1.S1_at--1134--1311Chr11:21771754..21771778 (25 bp)
AGAGGGCTACTACACAATTACTTAG
LOC_Os11g37700
Os.5349.1.S1_at--955--3951Chr11:21771520..21771544 (25 bp)
CGGACCTCACCCATGATCATAAAAT
NONE
Target Sequence 
TTAGGCCGTTGATACCGATTTGGTGGAGGTGGTACTACTGGGCAAACCCCGTGTCATGGACCATCTATGGTGTTGTGGCG
TCACAGTTTGGTAAAAATGGTGATGTTCTTTCGGTTCCCGGTGGGAGCCCTACNGTAGTGAAGCAATTCNTGGAGGACAA
CCTAGGGATGCGGCATAGTTTCCTAGGATATGTTGTGCTCACACATTTTGGCTACATCATCGTTTTCTTCTTCATCTTTG
GCTATGCCATCAAGTACTTCAACTTCCAGAAACGATAGAGATGGTATGTNATGGCATAGAGTGACATTATTTTTGGCCGC
CACTGCCACTTGCAGCTAAAGAGGGCTACTACACAATTACTTAGTTAAGTTAGAAGTGCTTGTAGATTGTTCTAGTTTGT
AAACATTCACTTCATGTATCTATATACACACCAATGCTATTCTAAGCCATGGATGTGATTTGTTATTCCATTTGCAGACT
AATAGATCATCCTAAGATTGTATAAACCTCTAGGAATTGTAAAAGTTGGCCCACAAGTGTAAAAAAACCCTCTCATTTGC
GTCCTAACCTTGCCGGACCTCACCCATGATCATAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis