Browse Element(s) Details


OsAffx.31351.1.S1_at

Description tigr:9639.m03417
TID=OsAffx.31351.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3772010/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37700Os.5349.1.S1_at10/1111+21771553..21780972ABC transporter, putative, expressed
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37720OsAffx.31351.1.S1_at10/1111+21800587..21802336Integral membrane protein DUF6 containing protein, expressed
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g37740Os.52399.1.S1_x_at11/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37740Os.52997.1.S1_at10/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37750Os.8664.1.S1_at3/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37750Os.26510.1.S1_at1/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31351.1.S1_at--218--4571Chr11:21801358..21801382 (25 bp)
GCGCCGATCACGCTGTGCACCGTGA
LOC_Os11g37720
OsAffx.31351.1.S1_at--472--3891Chr11:21801370..21801394 (25 bp)
CTGTGCACCGTGACGTCGTTCCTGG
LOC_Os11g37720
OsAffx.31351.1.S1_at--934--3531Chr11:21801624..21801648 (25 bp)
CATCTTCCTCGGCAGAGTCGTCAAG
LOC_Os11g37720
OsAffx.31351.1.S1_at--148--3791Chr11:21801631..21801655 (25 bp)
CTCGGCAGAGTCGTCAAGCCTGGAA
LOC_Os11g37720
OsAffx.31351.1.S1_at--444--1151NONE
AGTCGTCAAGCCTGGAAGTGTGGTA
NONE
OsAffx.31351.1.S1_at--5--7491Chr11:21802176..21802200 (25 bp)
GTGTGGTAGGGATGATTCTCCTCTT
LOC_Os11g37720
OsAffx.31351.1.S1_at--956--10091Chr11:21802211..21802235 (25 bp)
TATGTGGTGCTATGGGCAAAGAAGA
LOC_Os11g37720
OsAffx.31351.1.S1_at--757--5371Chr11:21802231..21802255 (25 bp)
GAAGAAAGAGACCACCATCATCAAC
LOC_Os11g37720
OsAffx.31351.1.S1_at--1014--371Chr11:21802250..21802274 (25 bp)
ATCAACAGCGACGACTCATCCATGG
LOC_Os11g37720
OsAffx.31351.1.S1_at--1002--2151Chr11:21802254..21802278 (25 bp)
ACAGCGACGACTCATCCATGGCAGT
LOC_Os11g37720
OsAffx.31351.1.S1_at--7--9231Chr11:21802268..21802292 (25 bp)
TCCATGGCAGTGGCGACCAAGGATG
LOC_Os11g37720
Target Sequence 
GCGCCGATCACGCTGTGCACCGTGACGTCGTTCCTGGGGGCGGCGCTGACGGCGGCGCTGCAGCTGGTGGCGCGGGGGAG
CCTGGCCGGCACCGGCGCGGGGGCGGGGGTCGTGGGGCTCCGCGCCGTGCTGGCGCTGGTGCTCGTCGGCGGCGTGGTGA
GCTCGGCGTGCGTGGCGTTCCAGGCGTGGGCGCTGAAGAAGAAGGGCCCCGTGGTGGTGTCCATGTTCAGCCCCACGCAG
ACCGTCGGCTCCGCCGTCTTCTCGGCCATCTTCCTCGGCAGAGTCGTCAAGCCTGGAAGTGTGGTAGGGATGATTCTCCT
CTTCTCGGGGCTGTATGTGGTGCTATGGGCAAAGAAGAAAGAGACCACCATCATCAACAGCGACGACTCATCCATGGCAG
TGGCGACCAAGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis