Browse Element(s) Details


Os.26510.1.S1_at

Description gb:AK066312.1
DB_XREF= gi:32976330
TID=Os.26510.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067O06, full insert sequence.
FL= gb:AK066312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3775911/11Leucine Rich Repeat family protein, expressed
LOC_Os11g377501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g37740Os.52399.1.S1_x_at11/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37740Os.52997.1.S1_at10/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37750Os.8664.1.S1_at3/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37750Os.26510.1.S1_at1/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37759Os.26510.1.S1_at11/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52399.1.S1_x_at2/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52997.1.S1_at1/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37770NANA11+21838588..21839394retrotransposon protein, putative, unclassified
LOC_Os11g37774Os.52399.1.S1_x_at2/1111+21849960..21855075NB-ARC domain containing protein, expressed
LOC_Os11g37774Os.27037.1.A1_at1/1111+21849960..21855075NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26510.1.S1_at--1033--9731Chr11:21832222..21832246 (25 bp)
TAATTAGTCGCCTGTTCTAGCCGGA
LOC_Os11g37759
Os.26510.1.S1_at--1046--9931Chr11:21832239..21832263 (25 bp)
TAGCCGGACAATGATTTAGCCAAAG
LOC_Os11g37759
Os.26510.1.S1_at--883--8013Chr11:21832274..21832298 (25 bp)
GGAGGAGGCTACGAACCAATCTTGA
LOC_Os11g37759
Os.26510.1.S1_at--315--2651Chr11:21832287..21832311 (25 bp)
AACCAATCTTGAACCGGATCTCTTC
LOC_Os11g37759
Os.26510.1.S1_at--442--7971Chr11:21832302..21832326 (25 bp)
GGATCTCTTCACTCATTCGGTCATG
LOC_Os11g37759
Os.26510.1.S1_at--126--111Chr11:21832316..21832440 (25 bp)
ATTCGGTCATGCTTTCAGCGGCAGC
LOC_Os11g37759
Os.26510.1.S1_at--420--6671Chr11:21832533..21832557 (25 bp)
GTTGCTGTTGGTTTTCTTTCCCTGT
LOC_Os11g37759
Os.26510.1.S1_at--1066--6852Chr11:21855190..21855214 (25 bp)
GTTTGTAATAATGGTTGTCTCGGTT
NONE
Os.26510.1.S1_at--642--9511Chr11:21832601..21832625 (25 bp)
TCTCGGTTACAATAAGGCCCAAGTA
LOC_Os11g37759
Os.26510.1.S1_at--1064--4531Chr11:21832617..21832641 (25 bp)
GCCCAAGTAGGCTCAGACAGAAATT
LOC_Os11g37759
Os.26510.1.S1_at--50--5611Chr11:21832636..21832660 (25 bp)
GAAATTCCGAGCATATTGGCCGCTA
LOC_Os11g37759
Target Sequence 
TAATTAGTCGCCTGTTCTAGCCGGACAATGATTTAGCCAAAGAGGAGGAAGAGGAGGAGGCTACGAACCAATCTTGAACC
GGATCTCTTCACTCATTCGGTCATGCTTTCAGCGGCAGCTGCAGGGCAAGGAGAAGAATAAAAGGGAGAAGAGTAGAGCG
GAATTGAAGAGAAACTCATCTCCTTCGCTGGGCCTTTTTTTTTATTTTTTTGTTGCTGTTGGTTTTCTTTCCCTGTTTTT
TCTCAAGAATTTATATAGTGTGGTTTGTAATAATGGTTGTCTCGGTTACAATAAGGCCCAAGTAGGCTCAGACAGAAATT
CCGAGCATATTGGCCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis