Browse Element(s) Details


Os.52997.1.S1_at

Description gb:AK070352.1
DB_XREF= gi:32980376
TID=Os.52997.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051F10, full insert sequence.
FL= gb:AK070352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3774010/11NB-ARC domain containing protein, expressed
LOC_Os11g377591/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37720OsAffx.31351.1.S1_at10/1111+21800587..21802336Integral membrane protein DUF6 containing protein, expressed
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g37740Os.52399.1.S1_x_at11/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37740Os.52997.1.S1_at10/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37750Os.8664.1.S1_at3/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37750Os.26510.1.S1_at1/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37759Os.26510.1.S1_at11/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52399.1.S1_x_at2/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52997.1.S1_at1/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37770NANA11+21838588..21839394retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52997.1.S1_at--329--6172Chr11:21817334..21817358 (25 bp)
GAGGAAGTACCGCTTTCTTAATCAA
LOC_Os11g37740
Os.52997.1.S1_at--155--6991Chr11:21817340..21817364 (25 bp)
GTACCGCTTTCTTAATCAATTGATT
LOC_Os11g37740
Os.52997.1.S1_at--953--8811Chr11:21817360..21817384 (25 bp)
TGATTAGTTCACATTCCGCTACCTA
LOC_Os11g37740
Os.52997.1.S1_at--1149--1811Chr11:21817390..21817414 (25 bp)
ACGCCTTCATAGCTCTGCTTCGGAC
LOC_Os11g37740
Os.52997.1.S1_at--132--9491Chr11:21817403..21817427 (25 bp)
TCTGCTTCGGACTGCTCTCTAAATT
LOC_Os11g37740
Os.52997.1.S1_at--512--9091Chr11:21817415..21817439 (25 bp)
TGCTCTCTAAATTCTGTAACTAATC
LOC_Os11g37740
Os.52997.1.S1_at--1157--391NONE
ATCAGCTTTGCTTGTTCTCAGTTGG
NONE
Os.52997.1.S1_at--354--10791Chr11:21817448..21817472 (25 bp)
TTGTTCTCAGTTGGCGTATTTCGTT
LOC_Os11g37740
Os.52997.1.S1_at--1043--6852Chr11:21831988..21832012 (25 bp)
GTATTTCGTTCCTCAGTTCATATCG
LOC_Os11g37759
Os.52997.1.S1_at--924--1211Chr11:21817477..21817501 (25 bp)
AGTTCATATCGCTCTCGCACTTTCT
LOC_Os11g37740
Os.52997.1.S1_at--634--5111Chr11:21817493..21817517 (25 bp)
GCACTTTCTTTTTTCAGCACCTGAT
LOC_Os11g37740
Target Sequence 
GAGGAAGTACCGCTTTCTTAATCAATTGATTAGTTCACATTCCGCTACCTACACGCACGCCTTCATAGCTCTGCTTCGGA
CTGCTCTCTAAATTCTGTAACTAATCAGCTTTGCTTGTTCTCAGTTGGCGTATTTCGTTCCTCAGTTCATATCGCTCTCG
CACTTTCTTTTTTCAGCACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis