Browse Element(s) Details


Os.8664.1.S1_at

Description gb:AF402793.1
DB_XREF= gi:15430708
TID=Os.8664.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8664 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone RICS4992A putative glutathione S-transferase OsGSTT1 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTT1
FL= gb:AK104738.1 gb:AF402793.1 gb:AK060166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3773011/11Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g377503/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37700Os.5349.1.S1_at10/1111+21771553..21780972ABC transporter, putative, expressed
LOC_Os11g37710Os.27639.1.S1_x_at5/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37710OsAffx.8980.1.S1_at1/1111+21788671..21793470transposon protein, putative, unclassified
LOC_Os11g37720OsAffx.31351.1.S1_at10/1111+21800587..21802336Integral membrane protein DUF6 containing protein, expressed
LOC_Os11g37730Os.8664.1.S1_at11/1111+21804438..21808758Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os11g37740Os.52399.1.S1_x_at11/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37740Os.52997.1.S1_at10/1111+21809643..21817833NB-ARC domain containing protein, expressed
LOC_Os11g37750Os.8664.1.S1_at3/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37750Os.26510.1.S1_at1/1111+21820257..21823666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g37759Os.26510.1.S1_at11/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52399.1.S1_x_at2/1111+21827644..21832741Leucine Rich Repeat family protein, expressed
LOC_Os11g37759Os.52997.1.S1_at1/1111+21827644..21832741Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8664.1.S1_at--699--7791Chr11:21807934..21807958 (25 bp)
GGTCCCTGGGACTGATTGAATCTAT
LOC_Os11g37730
Os.8664.1.S1_at--1037--3192Chr11:21807976..21808000 (25 bp)
CAAAGTTCTTACTGGGCAATCCTCA
LOC_Os11g37730
Os.8664.1.S1_at--720--5191Chr11:21807991..21808015 (25 bp)
GCAATCCTCAGCTATCAATCGCAGA
LOC_Os11g37730
Os.8664.1.S1_at--945--3031Chr11:21808007..21808031 (25 bp)
AATCGCAGATCTTAGCCTTGTTTGT
LOC_Os11g37730
Os.8664.1.S1_at--461--10072Chr11:21823483..21823507 (25 bp)
TAGTGAACGCGACCGGATTCTTGGA
LOC_Os11g37750
Os.8664.1.S1_at--550--2271Chr11:21808327..21808351 (25 bp)
AAATCCGCAGTTGGGTTCAGAATGT
LOC_Os11g37730
Os.8664.1.S1_at--715--1692Chr11:21808358..21808382 (25 bp)
AGCCACAAGCCCTCATTTTGATGAA
LOC_Os11g37730
Os.8664.1.S1_at--408--5331Chr11:21808380..21808404 (25 bp)
GAAGTCCATGAGCTCATTTTCAAGA
LOC_Os11g37730
Os.8664.1.S1_at--31--2371Chr11:21808424..21808448 (25 bp)
AAAGCGCCAATCTGAGCCGAGCAAA
LOC_Os11g37730
Os.8664.1.S1_at--890--351Chr11:21808463..21808487 (25 bp)
ATCAAAGCTCTGAGGGTACCCGTAC
LOC_Os11g37730
Os.8664.1.S1_at--393--6991Chr11:21808478..21808502 (25 bp)
GTACCCGTACTACTCTCGTATATAG
LOC_Os11g37730
Target Sequence 
GGTCCCTGGGACTGATTGAATCTATGTGGCTCAAAGGCAACGCAAAGTTCTTACTGGGCAATCCTCAGCTATCAATCGCA
GATCTTAGCCTTGTTTGTGAAATAATGCAATTGGAGGTCCTCGGTGATAGTGAACGCGACCGGATTCTTGGACCTCATGA
GAAAATCCGCAGTTGGGTTCAGAATGTGAAGAAAGCCACAAGCCCTCATTTTGATGAAGTCCATGAGCTCATTTTCAAGA
TGAAGGAACGTATGGCTGCAAAGCGCCAATCTGAGCCGAGCAAAGACTTGAAGACAGCATCAAAGCTCTGAGGGTACCCG
TACTACTCTCGTATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis