Browse Element(s) Details


Os.10062.1.S1_at

Description gb:AK120186.1
DB_XREF= gi:37989809
TID=Os.10062.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034M15, full insert sequence.
FL= gb:AK120186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4348010/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43440Os.22455.1.A1_at9/115+25171607..25176541Single-strand binding protein family protein, expressed
LOC_Os05g43450Os.53504.1.S1_at11/115+25177479..25180516Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os05g43460Os.14885.1.S1_at9/115+25183001..25184001expressed protein
LOC_Os05g43470Os.5176.1.S1_at10/115+25184696..25189013chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed
LOC_Os05g43510OsAffx.15086.1.S1_at11/115+25208048..25209745Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os05g43520Os.34745.1.A1_at11/115+25212558..25215866BSD domain containing protein, expressed
LOC_Os05g43530OsAffx.20285.2.S1_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530Os.15705.1.S1_x_at11/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed
LOC_Os05g43530OsAffx.20285.1.S1_x_at1/115+25217581..25221292glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10062.1.S1_at--329--651Chr05:25195617..25195641 (25 bp)
ATGCACACTATAAAGAGACGCCGTC
LOC_Os05g43480
Os.10062.1.S1_at--502--1351Chr05:25195630..25195654 (25 bp)
AGAGACGCCGTCTACAAAATACAGG
LOC_Os05g43480
Os.10062.1.S1_at--992--7151Chr05:25195639..25195663 (25 bp)
GTCTACAAAATACAGGCACGCCTCA
LOC_Os05g43480
Os.10062.1.S1_at--866--5091Chr05:25195654..25195678 (25 bp)
GCACGCCTCAAGATAGTGACACAAT
LOC_Os05g43480
Os.10062.1.S1_at--87--7371NONE
GTGACACAATGAGAAAGGAGCTGAT
NONE
Os.10062.1.S1_at--744--5891Chr05:25196255..25196279 (25 bp)
GAGCTGATAAGCGAATCTGGAAGAA
LOC_Os05g43480
Os.10062.1.S1_at--1125--3271Chr05:25196289..25196313 (25 bp)
CAAAAATTCCAGAATCGCTGAGGGA
LOC_Os05g43480
Os.10062.1.S1_at--816--3391Chr05:25196298..25196322 (25 bp)
CAGAATCGCTGAGGGAGCATCTCAT
LOC_Os05g43480
Os.10062.1.S1_at--9--10471Chr05:25196341..25196365 (25 bp)
TTACCAGGACAAATTTTCACTGGGA
LOC_Os05g43480
Os.10062.1.S1_at--848--7511Chr05:25196447..25196471 (25 bp)
GTGGATGTATGTTCCATGTGGTATA
LOC_Os05g43480
Os.10062.1.S1_at--477--791Chr05:25196462..25196484 (23 bp)
ATGTGGTATATGTTTGCTCTGGTTC
LOC_Os05g43480
Target Sequence 
ATGCACACTATAAAGAGACGCCGTCTACAAAATACAGGCACGCCTCAAGATAGTGACACAATGAGAAAGGAGCTGATAAG
CGAATCTGGAAGAATATTTAGGTCAAAAATTCCAGAATCGCTGAGGGAGCATCTCATTCAAGCCCTGCGGTCATATTACC
AGGACAAATTTTCACTGGGAGGATAAATTTTGTGCGGCGGTTCATTAGAAACTTAAGAAAATGTATCTGTATTTACCATT
TTGTAGAATGGCAAATTGATGGTGGATGTATGTTCCATGTGGTATATGTTTGCTCTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis