Browse Element(s) Details


Os.10075.1.S1_at

Description gb:AK072662.1
DB_XREF= gi:32982685
TID=Os.10075.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full insert sequence.
FL= gb:AK072662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3009011/11Actin-depolymerizing factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30050OsAffx.21779.3.S1_at2/117+17721915..17724972retrotransposon protein, putative, unclassified
LOC_Os07g30050OsAffx.21779.2.S1_at1/117+17721915..17724972retrotransposon protein, putative, unclassified
LOC_Os07g30060NANA7+17729646..17731598hypothetical protein
LOC_Os07g30070NANA7+17732840..17735114retrotransposon protein, putative, unclassified
LOC_Os07g30080NANA7+17735367..17736244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g30090Os.10075.1.S1_at11/117+17739083..17740619Actin-depolymerizing factor 1, putative, expressed
LOC_Os07g30100Os.7160.1.S1_at11/117+17742340..17753618Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10075.1.S1_at--1101--5251Chr07:17740130..17740154 (25 bp)
GAATCCAGTGCGAGATTCAGGCCAC
LOC_Os07g30090
Os.10075.1.S1_at--775--691Chr07:17740168..17740192 (25 bp)
ATGAGCCTCGACATCATCAGAGCCA
LOC_Os07g30090
Os.10075.1.S1_at--169--5871Chr07:17740187..17740211 (25 bp)
GAGCCAGAGCTCACTGATGATCATA
LOC_Os07g30090
Os.10075.1.S1_at--33--9611Chr07:17740207..17740231 (25 bp)
TCATATCATTTCATCATCCAACACC
LOC_Os07g30090
Os.10075.1.S1_at--421--10511Chr07:17740242..17740266 (25 bp)
TTAATTCATTCCCAACGTCGATCGC
LOC_Os07g30090
Os.10075.1.S1_at--1054--9711Chr07:17740272..17740296 (25 bp)
TCAACCCCAGATCCATGCATATATA
LOC_Os07g30090
Os.10075.1.S1_at--827--9031Chr07:17740334..17740358 (25 bp)
TATGTCCGCTTAAATTTACCCTACG
LOC_Os07g30090
Os.10075.1.S1_at--286--3711Chr07:17740354..17740378 (25 bp)
CTACGTACGTTTTGATCCTCGCAAA
LOC_Os07g30090
Os.10075.1.S1_at--299--311Chr07:17740402..17740426 (25 bp)
ATACCGTTTTGATCGACTATTTATA
LOC_Os07g30090
Os.10075.1.S1_at--861--5671Chr07:17740438..17740462 (25 bp)
GACATTGATGTCGTCCAAGTATTAT
LOC_Os07g30090
Os.10075.1.S1_at--227--10391Chr07:17740499..17740523 (25 bp)
TTTTCTTCTGCTTATATCTTCAACT
LOC_Os07g30090
Target Sequence 
GAATCCAGTGCGAGATTCAGGCCACAGACCCCAGCGAGATGAGCCTCGACATCATCAGAGCCAGAGCTCACTGATGATCA
TATCATTTCATCATCCAACACCACCAGATTAATTAATTCATTCCCAACGTCGATCGCCTTATTCAACCCCAGATCCATGC
ATATATATATGCCCATGGGTTAATATATCATCAATTATGGGGTTTATGTCCGCTTAAATTTACCCTACGTACGTTTTGAT
CCTCGCAAAAAAAAACACATACATATATATATATACCGTTTTGATCGACTATTTATACGTTGTTATACGACATTGATGTC
GTCCAAGTATTATTATCCTATTATATATAATTCCTTCATTTCATTCTATTTTTCTTCTGCTTATATCTTCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis