Browse Element(s) Details


Os.10076.1.S1_at

Description gb:AK067548.1
DB_XREF= gi:32977566
TID=Os.10076.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107I22, full insert sequence.
FL= gb:AK061305.1 gb:AK104066.1 gb:AK067548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3383011/11Polypyrimidine tract-binding protein homolog 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33800NANA8+21022682..21024933Myb-like DNA-binding domain containing protein
LOC_Os08g33810Os.50542.1.S1_at11/118+21032164..21036917Biotin/lipoate A/B protein ligase family protein, expressed
LOC_Os08g33820Os.7890.2.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_a_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33820Os.7890.1.S1_x_at11/118+21038387..21039838Chlorophyll a-b binding protein 4, chloroplast precursor, putative, expressed
LOC_Os08g33830Os.10076.1.S1_at11/118+21040577..21046359Polypyrimidine tract-binding protein homolog 1, putative, expressed
LOC_Os08g33840OsAffx.6017.1.S1_at10/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.1.S1_x_at2/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.26904.1.S1_x_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33840OsAffx.20927.2.S1_at1/118+21052165..21053716hypothetical protein
LOC_Os08g33850Os.5241.1.S1_at11/118+21057383..21061481GDA1/CD39 family protein, expressed
LOC_Os08g33860Os.5671.1.S1_at11/118+21062021..21067288zinc finger family protein, putative, expressed
LOC_Os08g33870OsAffx.29169.1.S1_at8/118+21068044..21072012retrotransposon protein, putative, unclassified
LOC_Os08g33870OsAffx.29169.3.S1_at4/118+21068044..21072012retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10076.1.S1_at--519--8251Chr08:21041121..21041145 (25 bp)
GGCAGCGACTCCTGTTGGACAAGTG
LOC_Os08g33830
Os.10076.1.S1_at--1160--10391Chr08:21041064..21041088 (25 bp)
TTTTGGATCGGCATCGTCTGCATAC
LOC_Os08g33830
Os.10076.1.S1_at--1007--8851Chr08:21041026..21041050 (25 bp)
TGATGCCAGGATCAGTTCCACACTA
LOC_Os08g33830
Os.10076.1.S1_at--883--5191Chr08:21040996..21041020 (25 bp)
GAATTGGATCCAGTTCCGGAGCACT
LOC_Os08g33830
Os.10076.1.S1_at--547--8451Chr08:21040892..21040916 (25 bp)
GGCCAACCAATGTATTTCCCGAAAT
LOC_Os08g33830
Os.10076.1.S1_at--26--731Chr08:21040824..21040848 (25 bp)
ATGTTGCCTGCAATACTCGGGTCTG
LOC_Os08g33830
Os.10076.1.S1_at--162--3991Chr08:21040807..21040831 (25 bp)
CGGGTCTGGGTATCTTCTCTTCAAA
LOC_Os08g33830
Os.10076.1.S1_at--883--7911Chr08:21040777..21040801 (25 bp)
GGTTGTAACTCGTCTATGCAGCTAT
LOC_Os08g33830
Os.10076.1.S1_at--433--4711Chr08:21040700..21040724 (25 bp)
GCTGTCTGTAAACTGTCCGGCAATT
LOC_Os08g33830
Os.10076.1.S1_at--397--4991Chr08:21040658..21040682 (25 bp)
GCATGCCTGGTATTGTTCAGCTCGA
LOC_Os08g33830
Os.10076.1.S1_at--884--5551Chr08:21040629..21040653 (25 bp)
GAAATTTTTCTTCGTGCCCTATATT
LOC_Os08g33830
Target Sequence 
GGCAGCGACTCCTGTTGGACAAGTGCCAGCTTGGAATCCAAACATGCAGGCAGGTGCTTTTGGATCGGCATCGTCTGCAT
ACCCAACCCAACCAATGATGCCAGGATCAGTTCCACACTATCCAGGAATTGGATCCAGTTCCGGAGCACTGCCAGTATCG
TTCCAGGCCTCACATCAGATGCCACAGTATGGTGTACCCCCAGCTGCTCCACACCATGCTCCACCGGCTGGCCAACCAAT
GTATTTCCCGAAATAATCTATCTTTATCCGATGTACAAGCAATTAGAGCAATTGCAAATGTTGCCTGCAATACTCGGGTC
TGGGTATCTTCTCTTCAAATTTTGGGTTGTAACTCGTCTATGCAGCTATTCATATTGTAACTCAGTGAGCTCCCTGTCGC
AAATGTGCCTCTGCGTCAGTCGCTGTCTGTAAACTGTCCGGCAATTAGAAATTCCCATCCTTAGCATGCCTGGTATTGTT
CAGCTCGAAACTGAAATTTTTCTTCGTGCCCTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis