Browse Element(s) Details


Os.10120.3.S1_at

Description gb:AK058248.1
DB_XREF= gi:32968266
TID=Os.10120.3
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-B05, full insert sequence.
FL= gb:AK058248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1353011/1140S ribosomal protein S24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13520Os.7355.1.S1_at11/112+7245053..7248668Auxin-responsive protein IAA26, putative, expressed
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10120.3.S1_at--857--6651Chr02:7258869..7258893 (25 bp)
GTTGAATTGACATACCACCTTAGCT
LOC_Os02g13530
Os.10120.3.S1_at--7--251Chr02:7258858..7258882 (25 bp)
ATACCACCTTAGCTGCCTTAAGTTC
LOC_Os02g13530
Os.10120.3.S1_at--228--1751Chr02:7258853..7258877 (25 bp)
ACCTTAGCTGCCTTAAGTTCTCCGC
LOC_Os02g13530
Os.10120.3.S1_at--1014--10391Chr02:7258817..7258841 (25 bp)
TTTTGTACCCCTTAGCGCATCTCCT
LOC_Os02g13530
Os.10120.3.S1_at--1134--10451Chr02:7258806..7258830 (25 bp)
TTAGCGCATCTCCTTGTCGCTATTC
LOC_Os02g13530
Os.10120.3.S1_at--737--3811Chr02:7258797..7258821 (25 bp)
CTCCTTGTCGCTATTCGCAGAATAT
LOC_Os02g13530
Os.10120.3.S1_at--590--5231Chr02:7258778..7258802 (25 bp)
GAATATGGATTGATCTGCTAGAAAA
LOC_Os02g13530
Os.10120.3.S1_at--494--8791Chr02:7258719..7258743 (25 bp)
TGTTACATTACATTGCTGCGTTTAC
LOC_Os02g13530
Os.10120.3.S1_at--653--71Chr02:7258708..7258732 (25 bp)
ATTGCTGCGTTTACTGTGACTTGGC
LOC_Os02g13530
Os.10120.3.S1_at--291--6831Chr02:7258700..7258724 (25 bp)
GTTTACTGTGACTTGGCTTTGATCA
LOC_Os02g13530
Os.10120.3.S1_at--170--3471Chr02:7258664..7258688 (25 bp)
CAGTGTCCCTATAAATTGGCTCTTA
LOC_Os02g13530
Target Sequence 
GTTGAATTGACATACCACCTTAGCTGCCTTAAGTTCTCCGCCCACTATCAATTTTTGTACCCCTTAGCGCATCTCCTTGT
CGCTATTCGCAGAATATGGATTGATCTGCTAGAAAAAAAAGTTTTTTGAGCATTTTGACATATGCCCCCCTGTTACATTA
CATTGCTGCGTTTACTGTGACTTGGCTTTGATCANCATACCATNTCAGTGTCCCTATAAATTGGCTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10120.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis