Browse Element(s) Details


Os.25515.1.S1_s_at

Description gb:CA766660
DB_XREF= gi:27548641
DB_XREF=AF53-Rpf_12_E24_T7_084.ab1
CLONE=C0004344
TID=Os.25515.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25515 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1357010/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25515.1.S1_s_at--833--8351Chr02:7279508..7279532 (25 bp)
GGCGGTGAACCGTGTCCAGAAGCTT
LOC_Os02g13570
Os.25515.1.S1_s_at--46--7471Chr02:7279497..7279521 (25 bp)
GTGTCCAGAAGCTTACATTGCCGAA
LOC_Os02g13570
Os.25515.1.S1_s_at--666--71Chr02:7279481..7279505 (25 bp)
ATTGCCGAAAGCTGGCCAGTCATCA
LOC_Os02g13570
Os.25515.1.S1_s_at--977--7071Chr02:7279463..7279487 (25 bp)
GTCATCAAGCTTGCGACCTAAACCA
LOC_Os02g13570
Os.25515.1.S1_s_at--835--9811Chr02:7279445..7279469 (25 bp)
TAAACCAAGAGATCCTGCCCCAGCT
LOC_Os02g13570
Os.25515.1.S1_s_at--686--4531NONE
GCCCCAGCTAGATCTTCAGCAGCAA
NONE
Os.25515.1.S1_s_at--218--6191Chr02:7278679..7278703 (25 bp)
GAGGACCATAGATCAAGTTCATAAA
LOC_Os02g13570
Os.25515.1.S1_s_at--1026--10451Chr02:7278651..7278675 (25 bp)
TTAGCCAACTTATACTCAGCTTTAT
LOC_Os02g13570
Os.25515.1.S1_s_at--265--8131Chr02:7278589..7278613 (25 bp)
GGACAGAAAGGCTATGCTTTAGACA
LOC_Os02g13570
Os.25515.1.S1_s_at--666--2691Chr02:7278541..7278565 (25 bp)
AAGCTGCCATCTGATTTTCTTGTGC
LOC_Os02g13570
Os.25515.1.S1_s_at--546--6291Chr02:7278493..7278517 (25 bp)
GATGTTGTGCCCTATATTGATATCA
LOC_Os02g13570
Target Sequence 
GGCGGTGAACCGTGTCCAGAAGCTTACATTGCCGAAAGCTGGCCAGTCATCAAGCTTGCGACCTAAACCAAGAGATCCTG
CCCCAGCTAGATCTTCAGCAGCAACAGGTGTANGANAAAGTTNNACTTCCCNAGGCAACTCCTCCCCTTGCAAGAAATAA
TAGTACTTTGAAGAGAGGACCATAGATCAAGTTCATAAACATTTAGCCAACTTATACTCAGCTTTATTTNTTGTATAGTT
TTTCAATATATACTTTTTTAAGATGGACAGAAAGGCTATGCTTTAGACANGGATTTTGAAAGTCAAGCTGCCATCTGATT
TTCTTGTGCAAATAGTAAGCTTACACTGNCTAGATGTTGTGCCCTATATTGATATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25515.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis