Browse Element(s) Details


OsAffx.24227.1.S1_at

Description tigr:9630.m01248
TID=OsAffx.24227.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1355010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13520Os.7355.1.S1_at11/112+7245053..7248668Auxin-responsive protein IAA26, putative, expressed
LOC_Os02g13530Os.10120.3.S1_at11/112+7258550..726038040S ribosomal protein S24, putative, expressed
LOC_Os02g13540NANA2+7260978..7261178hypothetical protein
LOC_Os02g13550OsAffx.24227.1.S1_at10/112+7263069..7263566hypothetical protein
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24227.1.S1_at--392--831Chr02:7263101..7263125 (25 bp)
ATGGACTAGGCGGTGCTGCCATCAT
LOC_Os02g13550
OsAffx.24227.1.S1_at--409--8131Chr02:7263103..7263127 (25 bp)
GGACTAGGCGGTGCTGCCATCATGT
LOC_Os02g13550
OsAffx.24227.1.S1_at--701--2031Chr02:7263105..7263129 (25 bp)
ACTAGGCGGTGCTGCCATCATGTGG
LOC_Os02g13550
OsAffx.24227.1.S1_at--56--8371Chr02:7263109..7263133 (25 bp)
GGCGGTGCTGCCATCATGTGGTCAC
LOC_Os02g13550
OsAffx.24227.1.S1_at--1034--4671Chr02:7263110..7263134 (25 bp)
GCGGTGCTGCCATCATGTGGTCACG
LOC_Os02g13550
OsAffx.24227.1.S1_at--180--7791Chr02:7263112..7263136 (25 bp)
GGTGCTGCCATCATGTGGTCACGGC
LOC_Os02g13550
OsAffx.24227.1.S1_at--416--9111Chr02:7263114..7263138 (25 bp)
TGCTGCCATCATGTGGTCACGGCTT
LOC_Os02g13550
OsAffx.24227.1.S1_at--203--3831Chr02:7263116..7263140 (25 bp)
CTGCCATCATGTGGTCACGGCTTGG
LOC_Os02g13550
OsAffx.24227.1.S1_at--85--3571Chr02:7263120..7263144 (25 bp)
CATCATGTGGTCACGGCTTGGCGGC
LOC_Os02g13550
OsAffx.24227.1.S1_at--659--8591Chr02:7263127..7263151 (25 bp)
TGGTCACGGCTTGGCGGCCTGGATC
LOC_Os02g13550
OsAffx.24227.1.S1_at--966--8351NONE
GGCGGCATAGCCAGGCCCAGCAGAT
NONE
Target Sequence 
ATGGACTAGGCGGTGCTGCCATCATGTGGTCACGGCTTGGCGGCCTGGATCCGCACCCCTGTGGCCGCGGCGGCGGCATA
GCCAGGCCCAGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis