Browse Element(s) Details


OsAffx.12022.1.S1_s_at

Description tigr:9630.m01254
TID=OsAffx.12022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Avr9Cf-9 rapidly elicited protein 146
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1360011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13560Os.50292.1.S1_at11/112+7273050..7278242Sugar transporter type 2a, putative, expressed
LOC_Os02g13570OsAffx.12020.1.S1_at11/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13570Os.25515.1.S1_s_at10/112+7278455..7280993Kinesin motor domain containing protein, expressed
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12022.1.S1_s_at--84--3951Chr02:7301460..7301484 (25 bp)
CGGCATCGCCTAGATCGCGGTCGAT
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--295--3691Chr02:7301469..7301493 (25 bp)
CTAGATCGCGGTCGATCGCCATAGC
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--674--511Chr02:7301508..7301532 (25 bp)
ATCGATCGAGAGACAAGCCTTTCTT
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--634--5591Chr02:7301519..7301543 (25 bp)
GACAAGCCTTTCTTTGTACGACGTT
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--171--8751Chr02:7301533..7301557 (25 bp)
TGTACGACGTTGTACGGCTGTGCTT
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--900--6991Chr02:7301544..7301568 (25 bp)
GTACGGCTGTGCTTTGTACACCAAA
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--1009--7311Chr02:7301552..7301576 (25 bp)
GTGCTTTGTACACCAAACTCCATGT
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--150--2391Chr02:7301566..7301590 (25 bp)
AAACTCCATGTTGCTACCATTGCTA
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--299--731Chr02:7301573..7301597 (25 bp)
ATGTTGCTACCATTGCTACTACTGC
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--297--4851Chr02:7301587..7301611 (25 bp)
GCTACTACTGCGTACTAATTACTTG
LOC_Os02g13600
OsAffx.12022.1.S1_s_at--1095--6991Chr02:7301598..7301622 (25 bp)
GTACTAATTACTTGTCATGTCCTAA
LOC_Os02g13600
Target Sequence 
CGGCATCGCCTAGATCGCGGTCGATCGCCATAGCCACGCACACGATCGATCGATCGAGAGACAAGCCTTTCTTTGTACGA
CGTTGTACGGCTGTGCTTTGTACACCAAACTCCATGTTGCTACCATTGCTACTACTGCGTACTAATTACTTGTCATGTCC
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12022.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis