Browse Element(s) Details


Os.32259.1.S1_at

Description gb:AK105482.1
DB_XREF= gi:32990691
TID=Os.32259.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B03, full insert sequence.
FL= gb:AK105482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32259.1.S1_at--154--8371Chr02:7322429..7322453 (25 bp)
GGCGAAGATCTTGCCGGAGGAATTC
LOC_Os02g13650
Os.32259.1.S1_at--711--91Chr02:7322450..7322474 (25 bp)
ATTCCGGCTGGAGAGGCATGTCACG
LOC_Os02g13650
Os.32259.1.S1_at--742--951Chr02:7322476..7322500 (25 bp)
AGGAGCTGAATCTTGCATATGCGTA
LOC_Os02g13650
Os.32259.1.S1_at--554--611Chr02:7322494..7322518 (25 bp)
ATGCGTACCATGAGTTTACCAGCCT
LOC_Os02g13650
Os.32259.1.S1_at--73--2871Chr02:7322574..7322598 (25 bp)
AAGTGTTCTAGTGGCAATGCTACTG
LOC_Os02g13650
Os.32259.1.S1_at--1009--5951Chr02:7322614..7322638 (25 bp)
GAGCAATTCGATGGTGGATCCAGCT
LOC_Os02g13650
Os.32259.1.S1_at--890--7971Chr02:7322629..7322653 (25 bp)
GGATCCAGCTGATGCTTCTGATTTT
LOC_Os02g13650
Os.32259.1.S1_at--833--5491Chr02:7322703..7322727 (25 bp)
GAAAACCTCGTAAGGCTTCTTCTCG
LOC_Os02g13650
Os.32259.1.S1_at--224--10591Chr02:7322722..7322746 (25 bp)
TTCTCGCAGTTTACCGTTCACAATG
LOC_Os02g13650
Os.32259.1.S1_at--180--9851Chr02:7322765..7322789 (25 bp)
TACAATTACGTTCCATTCTTCCATT
LOC_Os02g13650
Os.32259.1.S1_at--998--2091Chr02:7322805..7322829 (25 bp)
ACAGGCGTTTTATTACCATTGTATC
LOC_Os02g13650
Target Sequence 
GGCGAAGATCTTGCCGGAGGAATTCCGGCTGGAGAGGCATGTCACGGAGGAGCTGAATCTTGCATATGCGTACCATGAGT
TTACCAGCCTCAAGAATGGGGAAATCTTCGACTGGTTTGAGTCGCATATGGATCATAAGAGCTGAAAGTGTTCTAGTGGC
AATGCTACTGAAACTGATTTGAAGCGAGCAATTCGATGGTGGATCCAGCTGATGCTTCTGATTTTGAGGAATGGAATGCA
CAATCATTGATTCAAGAGAGATGGGAAGATGGAGGAAAACCTCGTAAGGCTTCTTCTCGCAGTTTACCGTTCACAATGCC
CACTTGTAGTTTNTAATACAATTACGTTCCATTCTTCCATTGTTGTTGTTGATGTAACAGGCGTTTTATTACCATTGTAT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis