Browse Element(s) Details


OsAffx.2600.1.S1_at

Description tigr:9630.m01262
TID=OsAffx.2600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1367011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13700OsAffx.12023.1.S1_at10/112+7348539..7349632hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2600.1.S1_at--495--4691Chr02:7334022..7334046 (25 bp)
GCGGCAAGCCCGACCGGAAGACGAC
LOC_Os02g13670
OsAffx.2600.1.S1_at--295--5831Chr02:7334011..7334035 (25 bp)
GACCGGAAGACGACGGAGCGCATCC
LOC_Os02g13670
OsAffx.2600.1.S1_at--733--1511Chr02:7333980..7334004 (25 bp)
AGCAGATGAACAAGCTCTACTCCCA
LOC_Os02g13670
OsAffx.2600.1.S1_at--626--3271Chr02:7333925..7333949 (25 bp)
CACAGTTAATTCCATTCCTTCACAT
LOC_Os02g13670
OsAffx.2600.1.S1_at--1145--6751Chr02:7333921..7333945 (25 bp)
GTTAATTCCATTCCTTCACATTCAA
LOC_Os02g13670
OsAffx.2600.1.S1_at--28--10691Chr02:7333916..7333940 (25 bp)
TTCCATTCCTTCACATTCAAATTCA
LOC_Os02g13670
OsAffx.2600.1.S1_at--696--3272Chr11:15639992..15640011 (20 bp)
CAAAGAAAATTACGGATTCTCGGTG
NONE
OsAffx.2600.1.S1_at--914--3951Chr02:7333597..7333621 (25 bp)
CGGAGTACATAAGGCAGACGCAGGA
LOC_Os02g13670
OsAffx.2600.1.S1_at--124--4711Chr02:7333357..7333381 (25 bp)
GCGGCCAGGTGCAGAACGCGCACTT
LOC_Os02g13670
OsAffx.2600.1.S1_at--369--7331Chr02:7333349..7333373 (25 bp)
GTGCAGAACGCGCACTTCTCCGTCG
LOC_Os02g13670
OsAffx.2600.1.S1_at--492--3371Chr02:7333198..7333329 (25 bp)
CACCATCCACGCCATGATTGGAGAT
LOC_Os02g13670
Target Sequence 
GCGGCAAGCCCGACCGGAAGACGACGGAGCGCATCCGCCGCGAGCAGATGAACAAGCTCTACTCCCACCTCGACTCCCTC
GTCCGCTCCGCTCCCCCCACAGTTAATTCCATTCCTTCACATTCAAATTCAAATTCAAAATACCATCAAAGAAAATTACG
GATTCTCGGTGGGGCGGCGGCGGCGACGACGAGGCCGGACAGGTTGGGGGTGGCGGCGGAGTACATAAGGCAGACGCAGG
AGAGGGTGGACATGCTGAGGGAGAAGAAGAGGGAGCTCACCGGCGGCGGCGGCGGCGGCTCCTCGTCGTCGTCCGGCGCC
GGGGCGGCCACGGCCGCCGCGCCGGAGGTGGAGGTGCAGCACCTGGGGTCCGGCCTGCACGCCATCCTCTTCACCGGCGC
GCCGCCCACCGACGGCGCCTCCTTCCACCGCGCCGTCCGCGCCGTCGAGGACGCCGGCGGCCAGGTGCAGAACGCGCACT
TCTCCGTCGCCGGCGCCAAGGCCGTCTACACCATCCACGCCATGATTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis