Browse Element(s) Details


OsAffx.24231.1.S1_at

Description tigr:9630.m01264
TID=OsAffx.24231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g136904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA
LOC_Os02g13690OsAffx.24231.1.S1_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13690OsAffx.24231.1.S1_x_at4/112+7346820..7347587hypothetical protein
LOC_Os02g13700OsAffx.12023.1.S1_at10/112+7348539..7349632hypothetical protein
LOC_Os02g13710OsAffx.24232.2.S1_s_at11/112+7365310..7366400AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24231.1.S1_at--1051--2491Chr02:7347525..7347549 (25 bp)
AACTTTGGCACCTCGGCTAGGCTAT
LOC_Os02g13690
OsAffx.24231.1.S1_at--738--10851Chr02:7347521..7347545 (25 bp)
TTGGCACCTCGGCTAGGCTATGGCC
LOC_Os02g13690
OsAffx.24231.1.S1_at--41--4271Chr02:7347451..7347475 (25 bp)
GCCTTAGGTCGCACCTCCTTCTTGA
LOC_Os02g13690
OsAffx.24231.1.S1_at--831--4311NONE
CCTTCTTGACGTCGTGGTGTGGGAA
NONE
OsAffx.24231.1.S1_at--536--4351Chr02:7346716..7346740 (25 bp)
CCAGCTGTTCGTCTTCCAAGGAGTT
NONE
OsAffx.24231.1.S1_at--938--1591Chr02:7346714..7346738 (25 bp)
AGCTGTTCGTCTTCCAAGGAGTTCA
NONE
OsAffx.24231.1.S1_at--829--3871Chr02:7346712..7346736 (25 bp)
CTGTTCGTCTTCCAAGGAGTTCACA
NONE
OsAffx.24231.1.S1_at--810--6711Chr02:7346710..7346734 (25 bp)
GTTCGTCTTCCAAGGAGTTCACACG
NONE
OsAffx.24231.1.S1_at--656--10611Chr02:7346709..7346733 (25 bp)
TTCGTCTTCCAAGGAGTTCACACGA
NONE
OsAffx.24231.1.S1_at--1021--3191Chr02:7346922..7346946 (25 bp)
CAATGATAATGGAAGTACGCTGGAA
LOC_Os02g13690
OsAffx.24231.1.S1_at--499--6991Chr02:7346787..7346811 (25 bp)
GTACGCTGGAAAATAGTCGTGGTGT
NONE
Target Sequence 
AACTTTGGCACCTCGGCTAGGCTATGGCCCCTCCAGCACCTCGGCCGCGCTATGGCCCCTCCGGCACCGGCTCCGCCTTA
GGTCGCACCTCCTTCTTGACGTCGTGGTGTGGGAAGTGAGGAAGCGTGGCGTGACAGTGAAGGACATGACCGGTGTCCAG
CTGTTCGTCTTCCAAGGAGTTCACACGAAAACCAATGATAATGGAAGTACGCTGGAAAATAGTCGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis