Browse Element(s) Details


OsAffx.24230.1.S1_x_at

Description tigr:9630.m01256
TID=OsAffx.24230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 89809-89306
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1362011/11hypothetical protein
LOC_Os05g439101/11Cytochrome P450 family protein, expressed
LOC_Os06g156801/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13580OsAffx.24229.1.S1_at11/112+7281235..7285696Kinesin motor domain containing protein, expressed
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24230.1.S1_x_at--778--4031Chr02:7310469..7310493 (25 bp)
CGTTCTTGGCGACGTTCATCGGCAA
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--646--10553Chr05:25460116..25460212 (25 bp)
TTCTTGGCGACGTTCATCGGCAACC
LOC_Os05g43910
OsAffx.24230.1.S1_x_at--926--2111Chr02:7310793..7310817 (25 bp)
ACATGGGCGTGTGCAGGCGCTTCAA
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--44--9431Chr02:7310823..7310847 (25 bp)
TCGGGAGGACGCACCCGGCGCTCTT
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--582--9571Chr02:7310844..7310868 (25 bp)
TCTTCCAGGCCGACGCCATGAGACA
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--214--5811Chr02:7310855..7310879 (25 bp)
GACGCCATGAGACACATCCTCAGGA
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--710--691Chr02:7310861..7310885 (25 bp)
ATGAGACACATCCTCAGGAAGCTCT
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--792--1411Chr02:7310864..7310888 (25 bp)
AGACACATCCTCAGGAAGCTCTCCG
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--835--8551Chr02:7310902..7310926 (25 bp)
TGGATCGCCCAAGCCGACCAACACT
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--712--2451Chr02:7310921..7310945 (25 bp)
AACACTAGCCGCAGACACTTGACGA
LOC_Os02g13620
OsAffx.24230.1.S1_x_at--53--4131Chr02:7310930..7310954 (25 bp)
CGCAGACACTTGACGACGGCAGAGG
LOC_Os02g13620
Target Sequence 
CGTTCTTGGCGACGTTCATCGGCAACCACCACCTCGGGCACGGCGGCGACGGCCATGGCCACAAGGAGATGGAGCTGCTG
GCGACGACGACCGGCGGCGGCGGCGGCGGCGGCGGCGAGAGCATCCCGGCGGAGGAGCAGCAGCAGGTGGTGGAGGAGGC
GGAGTGCGAGTGCTGCGGCATGTCGGAGGAGTGCACGGCGGCGTACGCCGGGGCGGTGCGGCGGCGGTTCTCGGGGCGGT
GGGTGTGCGGGCTGTGCGCGGAGGCGGTGGCGGAGGAGGCCAGGAAGAAGAAGGGCGGCGAGCGGGAGGCGGCGCTGGCG
GCGCACATGGGCGTGTGCAGGCGCTTCAACGGCTTCGGGAGGACGCACCCGGCGCTCTTCCAGGCCGACGCCATGAGACA
CATCCTCAGGAAGCTCTCCGCCGCCGCCGCCCCTGGATCGCCCAAGCCGACCAACACTAGCCGCAGACACTTGACGACGG
CAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24230.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis