Browse Element(s) Details


Os.15093.1.S1_at

Description gb:AK101441.1
DB_XREF= gi:32986650
TID=Os.15093.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039E09, full insert sequence.
FL= gb:AK101441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1364011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15093.1.S1_at--261--2551Chr02:7318895..7318919 (25 bp)
AACTCGATTCAGATATGCTAGCATG
LOC_Os02g13640
Os.15093.1.S1_at--511--5631Chr02:7318950..7318974 (25 bp)
GACACTCCTGGAGTAGCTCTACTAG
LOC_Os02g13640
Os.15093.1.S1_at--912--4811Chr02:7318965..7318989 (25 bp)
GCTCTACTAGCGTTGTTTTTTCTAA
LOC_Os02g13640
Os.15093.1.S1_at--281--7371Chr02:7319000..7319024 (25 bp)
GTGAGAAGCCTTCCAGTTCAAGAAC
LOC_Os02g13640
Os.15093.1.S1_at--1046--611Chr02:7319114..7319138 (25 bp)
ATGCTGTTACTGGATGGATCATCGT
LOC_Os02g13640
Os.15093.1.S1_at--314--7151Chr02:7319145..7319169 (25 bp)
GTCTTTGTCAAACTATACTCCCATA
LOC_Os02g13640
Os.15093.1.S1_at--85--2631Chr02:7319234..7319258 (25 bp)
AACCTAGCGAACTGATGTTTTTGAC
LOC_Os02g13640
Os.15093.1.S1_at--628--8871Chr02:7319262..7319286 (25 bp)
TGATGTTGCATTTGACTATTCTGTC
LOC_Os02g13640
Os.15093.1.S1_at--423--6671Chr02:7319294..7319318 (25 bp)
GTTGCATTTGATATTACCTGTACTA
LOC_Os02g13640
Os.15093.1.S1_at--758--351Chr02:7319413..7319437 (25 bp)
ATAAGCATGTGCAACCGTTCCGGTT
LOC_Os02g13640
Os.15093.1.S1_at--938--9271Chr02:7319431..7319455 (25 bp)
TCCGGTTATTCTGGTTGCTGTCATA
LOC_Os02g13640
Target Sequence 
AACTCGATTCAGATATGCTAGCATGAAACTGATGTCCTTCTGTGAAGATAGGGAAGACACTCCTGGAGTAGCTCTACTAG
CGTTGTTTTTTCTAACAATCAAAGCGTGAGAAGCCTTCCAGTTCAAGAACAAGTAATAATAAACCATGGATGAAGCAATG
CAACATTATTGTGCTCAATATCTAAATTGCTTCACCTTTTTTTCCTGCTCCATGNTTCTGATGCTGTTACTGGATGGATC
ATCGTGGGCTTGTCTTTGTCAAACTATACTCCCATATACAGAGATCAAGGAAGGTGAGTTAGAGAGGTAGAGCGTGTGGG
ACTGAATGATAAACCAATAAAACCTAGCGAACTGATGTTTTTGACAGATGATGTTGCATTTGACTATTCTGTCACAGGAT
GTTGCATTTGATATTACCTGTACTATGTTGACATGTATGCTATTGCATTTGCTGTAGATGTCTGAGATTNGATTCAAGTT
TATGAAAGCAGCACACATTTGAATGTTTATGGCTTAACTTATAAGCATGTGCAACCGTTCCGGTTATTCTGGTTGCTGTC
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis