Browse Element(s) Details


Os.56059.1.S1_at

Description gb:AK109235.1
DB_XREF= gi:32994444
TID=Os.56059.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-F07, full insert sequence.
FL= gb:AK109235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g136309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13590OsAffx.12021.1.S1_at11/112+7299770..7300027hypothetical protein
LOC_Os02g13600OsAffx.12022.1.S1_s_at11/112+7300585..7301657expressed protein
LOC_Os02g13610NANA2+7303093..7303464retrotransposon protein, putative, unclassified
LOC_Os02g13620OsAffx.24230.1.S1_x_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13620OsAffx.24230.1.S1_at11/112+7310420..7310992hypothetical protein
LOC_Os02g13630Os.56059.2.S1_at10/112+7312011..7314657expressed protein
LOC_Os02g13630Os.56059.1.S1_at9/112+7312011..7314657expressed protein
LOC_Os02g13640Os.15093.1.S1_at11/112+7316399..7319487Leucine Rich Repeat family protein, expressed
LOC_Os02g13650Os.32259.1.S1_at11/112+7321447..7322881expressed protein
LOC_Os02g13660Os.8984.1.S1_at11/112+7323779..7325175meiosis 5, putative, expressed
LOC_Os02g13670OsAffx.2600.1.S1_at11/112+7333138..7334086Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g13679NANA2+7338896..7339693NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56059.1.S1_at--757--10711NONE
TTGCATCCTGCATAGACGGGTCTCA
NONE
Os.56059.1.S1_at--722--291NONE
ATAGACGGGTCTCAGCGTGCCTCGA
NONE
Os.56059.1.S1_at--458--7151Chr02:7312201..7312225 (25 bp)
GTCTCAGCGTGCCTCGATAACGAAA
LOC_Os02g13630
Os.56059.1.S1_at--554--9811Chr02:7312184..7312208 (25 bp)
TAACGAAAGACGACACTCCGGTGCT
LOC_Os02g13630
Os.56059.1.S1_at--1091--5031Chr02:7312149..7312173 (25 bp)
GCAGACTTTCTAAGCCTTTTGTTTT
LOC_Os02g13630
Os.56059.1.S1_at--644--2951Chr02:7312116..7312140 (25 bp)
AATCGGTTTAATTAGTGTGGACTGC
LOC_Os02g13630
Os.56059.1.S1_at--1114--5711Chr02:7312097..7312121 (25 bp)
GACTGCTGTATTCAGGGACATCCAC
LOC_Os02g13630
Os.56059.1.S1_at--464--271Chr02:7312070..7312094 (25 bp)
ATATGATAATATGTGCCTATGACCA
LOC_Os02g13630
Os.56059.1.S1_at--694--10091Chr02:7312053..7312077 (25 bp)
TATGACCACATCTTACCTGGAAGCA
LOC_Os02g13630
Os.56059.1.S1_at--798--7851Chr02:7312025..7312049 (25 bp)
GGTATTTTTTGCATTTCGTTTGAGT
LOC_Os02g13630
Os.56059.1.S1_at--989--10291Chr02:7312012..7312036 (25 bp)
TTTCGTTTGAGTTAAAGCGTCCACT
LOC_Os02g13630
Target Sequence 
TTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGACTTT
CTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAAT
ATGTGCCTATGACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAAGCGTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis