Browse Element(s) Details


Os.10150.1.S1_at

Description gb:CB674575
DB_XREF= gi:29678300
DB_XREF=OSJNEe09K23.r
CLONE=OSJNEe09K23
TID=Os.10150.1
CNT=76
FEA=FLmRNA
TIER=Stack
STK=18
UG=Os.10150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-E04, full insert sequence
FL= gb:AK105963.1 gb:AK120579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1289011/11Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12870Os.27542.1.A1_at1/113+6919618..6921929hypothetical protein
LOC_Os03g12879Os.49137.1.S1_at11/113+6922092..6923188expressed protein
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10150.1.S1_at--779--1331Chr03:6929032..6929056 (25 bp)
AGAGGGTTCACTGACGTGCTGTACC
LOC_Os03g12890
Os.10150.1.S1_at--589--1831Chr03:6929060..6929084 (25 bp)
ACGCGGTGCACAAGACGTACCTGGA
LOC_Os03g12890
Os.10150.1.S1_at--1118--10731Chr03:6929368..6929392 (25 bp)
TTGAAGAACGGCTCGTCTCCATCGA
LOC_Os03g12890
Os.10150.1.S1_at--898--1391Chr03:6929408..6929432 (25 bp)
AGACGAGGTGTTCTGCACCGGAACA
LOC_Os03g12890
Os.10150.1.S1_at--1105--5491Chr03:6929428..6929452 (25 bp)
GAACAGCGGTGGTCGTTGCCCCAGT
LOC_Os03g12890
Os.10150.1.S1_at--1059--6671Chr03:6929442..6929466 (25 bp)
GTTGCCCCAGTATCGAGTGTTACTT
LOC_Os03g12890
Os.10150.1.S1_at--626--9371Chr03:6929454..6929478 (25 bp)
TCGAGTGTTACTTACCATGGGCAAA
LOC_Os03g12890
Os.10150.1.S1_at--1062--2291Chr03:6929578..6929600 (23 bp)
AAAGGTACGAGTTCAGGACTGGACA
LOC_Os03g12890
Os.10150.1.S1_at--1057--8111Chr03:6929591..6929615 (25 bp)
GGACTGGACATGACACGTTATCGCA
LOC_Os03g12890
Os.10150.1.S1_at--695--6791Chr03:6929607..6929631 (25 bp)
GTTATCGCAGACACTGCACACGACT
LOC_Os03g12890
Os.10150.1.S1_at--339--6551Chr03:6929721..6929745 (25 bp)
GATTATTCCTCATGTCATCCAATGT
LOC_Os03g12890
Target Sequence 
AGAGGGTTCACTGACGTGCTGTACCTCGACGCGGTGCACAAGACGTACCTGGAGGAGGCCTCCTCCTGCAACCTCTTCAT
CGTCAAGGACGGCGTCGTCGCCACGCCGGCCACCGTGGGAACCATCCTGCCGGGGATCACGCGCAAGAGCGTCATCGAGC
TCGCCAGGGACCGCGGCTATCAGGTTGAAGAACGGCTCGTCTCCATCGACGATCTGGTCGGCGCAGACGAGGTGTTCTGC
ACCGGAACAGCGGTGGTCGTTGCCCCAGTATCGAGTGTTACTTACCATGGGCAAAGGTACGAGTTCAGGACTGGACATGA
CACGTTATCGCAGACACTGCACACGACTCTGACGTCCATCCAGATGGGCCTGGCTGAGGACAAGAAAGGATGGACAGTGG
CAATAGATTAAGGATGGATTATGGGCAAAGGGATCCCGATTATTCCTCATGTCATCCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis