Browse Element(s) Details


Os.49754.1.S1_x_at

Description gb:AY554031.1
DB_XREF= gi:46242602
TID=Os.49754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) clone S6489 Hox19 (hox19) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) clone S6489 Hox19 (hox19) mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1286010/11Homeobox associated leucine zipper family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12840Os.2488.1.S1_at11/113+6881231..6886590inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g12850OsAffx.3215.1.S1_at11/113+6887259..6888246hypothetical protein
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12870Os.27542.1.A1_at1/113+6919618..6921929hypothetical protein
LOC_Os03g12879Os.49137.1.S1_at11/113+6922092..6923188expressed protein
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009735biological_processresponse to cytokinin stimulus
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49754.1.S1_x_at--1071--8911Chr03:6910841..6910865 (25 bp)
TGAGCTGAGCTCTCATTCCTTCCTT
LOC_Os03g12860
Os.49754.1.S1_x_at--95--6491NONE
GATACGCACGCTTCGCTTGCTTGCA
NONE
Os.49754.1.S1_x_at--908--1391Chr03:6910948..6910972 (25 bp)
AGACGAGAGAGAGACGGCGAGCCCT
LOC_Os03g12860
Os.49754.1.S1_x_at--1084--1651Chr03:6910967..6910991 (25 bp)
AGCCCTGGCACGCACGAGAAGCGAA
LOC_Os03g12860
Os.49754.1.S1_x_at--678--5091Chr03:6910974..6910998 (25 bp)
GCACGCACGAGAAGCGAATCGAAGT
LOC_Os03g12860
Os.49754.1.S1_x_at--633--1091Chr03:6910996..6911020 (25 bp)
AGTGGCGGCGACAGGAGCAGCTGCT
LOC_Os03g12860
Os.49754.1.S1_x_at--743--4771Chr03:6911015..6911039 (25 bp)
GCTGCTGCTGGTGGATTATCCGTCG
LOC_Os03g12860
Os.49754.1.S1_x_at--364--8571Chr03:6911026..6911050 (25 bp)
TGGATTATCCGTCGTCAACATGGCT
LOC_Os03g12860
Os.49754.1.S1_x_at--112--4251Chr03:6911034..6911058 (25 bp)
CCGTCGTCAACATGGCTCAGGAGGA
LOC_Os03g12860
Os.49754.1.S1_x_at--1157--851Chr03:6911045..6911069 (25 bp)
ATGGCTCAGGAGGACGTCGGTCACC
LOC_Os03g12860
Os.49754.1.S1_x_at--896--8531Chr03:6911193..6911217 (25 bp)
TGGAGCCGTCGCTGACCCTGAGCTT
LOC_Os03g12860
Target Sequence 
TGAGCTGAGCTCTCATTCCTTCCTTCTCCTTTCCGCCGGCCTCGCCTCTCGTCTCCTCCTCTCCCCTACCGATACGCACG
CTTCGCTTGCTTGCACCTCGCGCGCNGAGAGACGAGAGAGAGACGGCGAGCCCTGGCACGCACGAGAAGCGAATCGAAGT
GGCGGCGACAGGAGCAGCTGCTGCTGGTGGATTATCCGTCGTCAACATGGCTCAGGAGGACGTCGGTCACCTGAGCGACG
CCGGCCTGGCGCTGGGCCTGTCCCTCGGCGGGGGAGGAGGAGGGACGACCGACGCGGCGGCGGCGCACCGTGGCGGCTGC
CGGCGGCCGTCGCCGTCGTCGCAGTGCCCGCCGCTGGAGCCGTCGCTGACCCTGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis