Browse Element(s) Details


Os.10204.1.S1_at

Description gb:AK109125.1
DB_XREF= gi:32994334
TID=Os.10204.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MYB family transcription factor (P0710E05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-D04, full insert sequence.
FL= gb:AK109125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0959010/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g09570Os.12230.1.S1_a_at11/111+4902411..4906316Phosphofructokinase family protein, expressed
LOC_Os01g09580Os.613.1.S1_a_at11/111+4906785..4911172Serine/threonine-protein kinase Eg2, putative, expressed
LOC_Os01g09590Os.10204.1.S1_at10/111+4914717..4916026Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g09600NANA1+4929300..4935396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09610OsAffx.21897.5.S1_x_at4/111+4935713..4938637retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10204.1.S1_at--184--8811Chr01:4915025..4915049 (25 bp)
TGTTCCCGGAATTCTGCATGAGCTC
LOC_Os01g09590
Os.10204.1.S1_at--757--3931Chr01:4914974..4914998 (25 bp)
CGGAGGACGACCACTTCATCGGCGG
LOC_Os01g09590
Os.10204.1.S1_at--1009--7271Chr01:4914893..4914917 (25 bp)
GTGCGTTTCAAAGATCAAACACTAG
LOC_Os01g09590
Os.10204.1.S1_at--421--7431Chr01:4914869..4914893 (25 bp)
GTGTTAGGATCAGTACATGCCACAT
LOC_Os01g09590
Os.10204.1.S1_at--606--7011Chr01:4914857..4914881 (25 bp)
GTACATGCCACATCTCCGCGTGTTC
LOC_Os01g09590
Os.10204.1.S1_at--706--6051Chr01:4914828..4914852 (25 bp)
GAGATTGGTCGATCGATCAAACATC
LOC_Os01g09590
Os.10204.1.S1_at--432--7211Chr01:4914821..4914845 (25 bp)
GTCGATCGATCAAACATCGCGTAAT
LOC_Os01g09590
Os.10204.1.S1_at--1139--491Chr01:4914806..4914830 (25 bp)
ATCGCGTAATTACAAGAAGCGTGTA
LOC_Os01g09590
Os.10204.1.S1_at--478--5411Chr01:4914791..4914815 (25 bp)
GAAGCGTGTAGTGTACTTGAACATG
LOC_Os01g09590
Os.10204.1.S1_at--245--5971Chr01:4914767..4914791 (25 bp)
GAGAAAATTCATCAGGTGCAAAGTT
LOC_Os01g09590
Os.10204.1.S1_at--536--3731Chr01:4914715..4914739 (25 bp)
CTACTAGTATTTTGCTGTGCTTCAA
NONE
Target Sequence 
TGTTCCCGGAATTCTGCATGAGCTCCGANGACCTCGCCGGCGCCGCCACGGCGGAGGACGACCACTTCATCGGCGGCGGN
TNCTACTACCCTCTCGATCNGAGCTNGTCATCATCANTAGTGTAGNGAACTCGTGCGTTTCAAAGATCAAACACTAGTGT
TAGGATCAGTACATGCCACATCTCCGCGTGTTCCTNCGAGATTGGTCGATCGATCAAACATCGCGTAATTACAAGAAGCG
TGTAGTGTACTTGAACATGAGAAAATTCATCAGGTGCAAAGTTAGANCACTTGCTATGAACAAAAAGCTACTACTAGTAT
TTTGCTGTGCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis