Browse Element(s) Details


Os.613.1.S1_a_at

Description gb:AK102360.1
DB_XREF= gi:32987569
TID=Os.613.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0710E05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091I08, full insert sequence.
FL= gb:AK102360.1 gb:AK061360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0958011/11Serine/threonine-protein kinase Eg2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09560Os.5825.1.S1_a_at11/111+4888318..4893678Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g09570Os.12230.1.S1_a_at11/111+4902411..4906316Phosphofructokinase family protein, expressed
LOC_Os01g09580Os.613.1.S1_a_at11/111+4906785..4911172Serine/threonine-protein kinase Eg2, putative, expressed
LOC_Os01g09590Os.10204.1.S1_at10/111+4914717..4916026Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g09600NANA1+4929300..4935396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09610OsAffx.21897.5.S1_x_at4/111+4935713..4938637retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016572biological_processhistone phosphorylation
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005819cellular_componentspindle
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.613.1.S1_a_at--759--9271Chr01:4907777..4907801 (25 bp)
TCCTGTGCTATGAGTTCCTTTATGG
LOC_Os01g09580
Os.613.1.S1_a_at--891--10091Chr01:4907757..4907781 (25 bp)
TATGGAGTCCCACCTTTCGAAGCAA
LOC_Os01g09580
Os.613.1.S1_a_at--212--2831Chr01:4907369..4907393 (25 bp)
AAGTTCCCACTGAAACCATTCGTGT
LOC_Os01g09580
Os.613.1.S1_a_at--373--9291Chr01:4907345..4907369 (25 bp)
TCCCCGGCTGCGAAAGACCTAATTT
LOC_Os01g09580
Os.613.1.S1_a_at--848--2751Chr01:4907207..4907356 (25 bp)
AAGACCTAATTTCACAGATGCTCGT
LOC_Os01g09580
Os.613.1.S1_a_at--959--4791Chr01:4907188..4907212 (25 bp)
GCTCGTGAAGAATTCGGCGCATCGT
LOC_Os01g09580
Os.613.1.S1_a_at--679--6491Chr01:4907131..4907155 (25 bp)
GATAGTTCAAAACGCTGATCCCTCC
LOC_Os01g09580
Os.613.1.S1_a_at--703--911Chr01:4907095..4907119 (25 bp)
AGGCTAGAACAATCTCTTCCACTCT
LOC_Os01g09580
Os.613.1.S1_a_at--459--9891Chr01:4906997..4907021 (25 bp)
TACTACTCTACCTGTTGTTTCCGAT
LOC_Os01g09580
Os.613.1.S1_a_at--138--4651Chr01:4906880..4906904 (25 bp)
GCGTATGTGTTTTAGCGTGTGTTCA
LOC_Os01g09580
Os.613.1.S1_a_at--19--8691Chr01:4906830..4906854 (25 bp)
TGTGCAACGCCCTGTACTTAATGTA
LOC_Os01g09580
Target Sequence 
TCCTGTGCTATGAGTTCCTTTATGGAGTCCCACCTTTCGAAGCAAAAGAACACTCCGAAACATATCGCAGGATTGTGAAA
GTTGACTTGAAGTTCCCACTGAAACCATTCGTGTCCCCGGCTGCGAAAGACCTAATTTCACAGATGCTCGTGAAGAATTC
GGCGCATCGTCTGCCCCTCCACAAGCTCCTCGAGCACCCTTGGATAGTTCAAAACGCTGATCCCTCCGGCGTGTACAGAG
GCTAGAACAATCTCTTCCACTCTCCTCAATTCGAGGAGAGACCTGATTCTTTTTCATCACTGTTGTTATGGCAAAACAAG
AAAAAAGCAGTAGCCGTACTACTCTACCTGTTGTTTCCGATCCCAGCTGCGCCTGTGTAGTTACGTGACAACGTGTATGC
TCAAGCTTCAGATTTCCTCGATGAAGATTTGAAGCTGTGTGTGTGGGTTTAACGCGTATGTGTTTTAGCGTGTGTTCACA
GCATGGGGTTGTGATATGTTTTCTGTGCAACGCCCTGTACTTAATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.613.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis